Oryza brachyantha (malo sina): 102712970
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Entry
102712970 CDS
T02995
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 38
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
obr
Oryza brachyantha (malo sina)
Pathway
obr03013
Nucleocytoplasmic transport
obr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
102712970
03015 mRNA surveillance pathway
102712970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obr03019
]
102712970
Enzymes [BR:
obr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102712970
Messenger RNA biogenesis [BR:
obr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
102712970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
102712970
NCBI-ProteinID:
XP_015691195
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All DBs
Position
3:2585719..2589978
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AA seq
505 aa
AA seq
DB search
MADGGKAATPEKKSWADVEEEEEAKAKAAAEAEAASSSSTSAPAVDAQAKQIEALSLSVP
EEDGAGGGAGDDQGPPLLDDSDESQIQAVTSGGTVYESAAAFEDLKLTQELLKGLHDEMG
FSRPSKIQAVTLPMILTPPYKDLIAQAHNGSGKTTCFVLGMLSRVDPNRRVPQAICICPT
RELAQQNKSVLMRMGKFTGITCACAIPPAQKDYVPMAKMPAVTDQVVIGTSGTLMKWINH
KKLATRDIKILVFDEADHMLAEDGFRSDSERIMRDIQRSAGGCQVLLFSATFNERVKDFV
TKVIKDGNQIFVKKEELTLEKVKQYKVQVPNERAKIDVIKDKIFEFGQKVGQVIIFVRTK
QSTRDVHNALTLEDYVCSSIQGSLDQSEREKIIQEFKNGYTKVLISTDVLARGFDQAQVN
LVINYDMPIKFGTRDEPDYEVYLHRIGRAGRFGRKGAVFNLLCGETDNTVMRKIEDYFQH
RVPEVRNWQSEEDFERALKDAGLVE
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atggccgacggcgggaaggcggcgacgccggagaagaagtcgtgggccgacgtggaggag
gaggaggaggccaaggccaaggccgccgcggaggccgaggccgcctcgtcgtcttcgacg
agcgcgccggcggtggacgcgcaggccaagcagattgaggcgctctcgctctccgtgccg
gaggaggatggggccggcggcggggcgggggacgaccagggcccgcccctcctcgacgac
tccgatgagtcccaaatccaagccgtgacgtcgggaggcacggtgtatgagtcggcggcg
gccttcgaggatctgaagctgacgcaggagctgctcaaggggctgcacgacgagatgggg
ttcagccgcccgagtaagatccaggcggtcactctccccatgatcctcacgccgccctac
aaggacctgatcgcgcaggcgcacaacggctccgggaagaccacctgcttcgtcctcggc
atgctcagccgagtcgaccctaaccgaagggtcccgcaggccatctgcatctgccccacc
agggagctcgcccagcagaataagtcagtgcttatgagaatgggaaaatttactggcatt
acctgtgcctgcgcaatcccaccggctcagaaagattatgtgccgatggccaaaatgcca
gcggttactgaccaggtggtgatcggcacttctgggacgcttatgaagtggattaatcat
aagaagctagcaacaagggatatcaagatacttgtatttgatgaggcagaccatatgctt
gccgaggatggcttcaggagtgattctgaaaggattatgagggatatacaaagaagcgct
ggtggctgtcaggtgcttctcttctctgcgacgttcaacgagagagttaaagattttgtt
acaaaggtcattaaggacggaaatcaaatatttgtgaagaaggaagagcttactttggaa
aaagtcaagcaatataaagttcaagtccctaacgaaagggccaaaatagatgtcataaag
gacaagatttttgagtttggacaaaaagttggtcaggttataatatttgttagaacaaag
caaagtactagggatgtccacaatgctttgacattagaggactatgtatgctcctcgatt
caaggatcccttgaccaatcagagagggaaaagataatacaggaattcaaaaatgggtac
accaaggttcttatatcaactgatgttcttgctcgaggtttcgaccaagcacaggttaac
ctcgttatcaattatgacatgccaatcaagtttggcacaagagatgaacctgattatgag
gtgtacctgcacagaattggcagagctggtcgctttggccgaaaaggagctgttttcaac
ttgctgtgtggagaaacagataacactgtgatgagaaagattgaggactacttccagcac
agagtacctgaggttcgcaattggcaaagcgaggaagattttgaaagagctcttaaggat
gctggcctggttgagtaa
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