Oryza brachyantha (malo sina): 102713241
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Entry
102713241 CDS
T02995
Name
(RefSeq) DNA mismatch repair protein PMS1 isoform X2
KO
K10858
DNA mismatch repair protein PMS2
Organism
obr
Oryza brachyantha (malo sina)
Pathway
obr03430
Mismatch repair
obr03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
102713241
03460 Fanconi anemia pathway
102713241
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
obr03400
]
102713241
DNA repair and recombination proteins [BR:
obr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
102713241
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_mis_repair
MutL_C
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
102713241
NCBI-ProteinID:
XP_006647441
UniProt:
J3LEC6
LinkDB
All DBs
Position
2:complement(17048222..17055081)
Genome browser
AA seq
921 aa
AA seq
DB search
MGGGSSPAIRPIGRSAVHRICSGQVIFDLSSAVKELVENSLDAGATTVEVTLRGYGEDSF
TVSDNGTGIAPSNFQALALKHHTSKISDFGDLSSVATFGFRGEALSSLCALGKLTVETRT
KDEQVGTRLEFAHSGLVTGESKMARPVGTAVTVEKLFSTLPVRSKEFRRNIRKEYGKVIS
LLNAYALISKGVRLVCTNTTGKNSKMAVLRTQGSSSLKDNIITVFGSNTFKCLQPFNVTI
SEGCQVDGFLSKPGPGSGRNSGDRQFFYVNGRPVDVPKVSKLVNELYRSSNAKQYPVAVL
NFCIPTTSYDVNVAPDKRKIFFSSEQTILLSLREGIENMYCPQQCSFSINNIEDPEKEMD
PAIGGSDENMCLIEKENVSATENDDHMDETDSDDEVAPENQKVTSSVTETVATGSKPRDV
SPLPRGPPAQVDRSAWLSAYRHKQPEKMPTQVKGYLTRANQVRTGLATKSSPSSTVQPSI
MNFLSQNKRKHEDSCNLISEAPVLRRETCLEQVRRTELGANAPDTLTSSISNIVNTPQGT
NPLRHHSPQSFVPETTEDSPQYLEPPNIFSRTDEVPHLHPSDVHTTESEADKQHDRRHSK
CGSPGRCSEVEPQNELTIISVHDAHPDGHGNAIHSGSLSFPVMKFTLADLRRRRKHSFMI
SHTNKGCFPEKTTRCYKAATLDNNVPDNEEGKSKSLAAATSELDRFFSKDDFGEMEVVGQ
FNLGFIIGKLDHDLFIVDQHAADEKYNFENLSQSTTLNIQPLLQPLRLELSPEEEVIVSM
NMSTIRKNGFVLAEDVHASPCNRFFIKAVPFSKNITFGAQDVKELISMLADSQGDCSIIS
SYKLDRTDSICPSRVRAMLASRACRMSTMIGDPLTKAEMKKILKNLTGLRSPWNCPHGRP
TMRHLADLRTIKNEGWKATFS
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atggggggcggctcgtcgccggcgatacggccgatcgggaggtccgcggtgcaccggatt
tgctccggtcaggtcatcttcgacctctcctccgccgtcaaggagctcgtcgagaacagc
ctcgacgccggcgccaccaccgtcgaggtcaccctccgcggctacggcgaggactccttc
accgtctccgacaacggcaccggcatcgcgccgagcaatttccaggcgcttgctctgaag
caccacacctccaagatctcggatttcggcgacctcagctccgtcgccaccttcgggttc
cgtggggaggcgctcagctcgctctgcgcgctggggaagctgacggttgagacgaggacc
aaggacgagcaggtcgggacgcgcctggagttcgcgcactcgggcttggtgaccggcgag
agcaagatggcgcggccggtcgggacggccgtgaccgtcgagaaattgttctccacgctg
cctgttcggagcaaggagttcaggaggaacattcggaaggagtacgggaaagtgatctcc
ttgctgaatgcctatgccttgatttccaaaggggtcagattagtttgcacaaataccacc
ggcaagaattctaaaatggcggtgcttagaactcaagggagtagttcactgaaagacaat
atcattaccgtatttggttcgaacactttcaagtgcctacagcccttcaatgtgacaatc
tcagaaggctgccaagttgatggctttctttccaaacctggacctggtagcggtcgcaat
tcaggggatagacagttcttctatgttaatggcagacctgtcgatgtgccaaaggtctcc
aaacttgttaatgagctatacagaagctcaaacgccaagcaataccctgtggctgtattg
aatttctgtattccaaccacatcttatgatgtgaatgttgcgcctgataagagaaaaatt
ttcttctcatccgagcagaccattttgctatctttacgtgaaggtattgagaatatgtac
tgccctcaacaatgcagtttctccatcaacaacattgaagatcctgaaaaggaaatggat
ccagccattggtgggtctgatgaaaacatgtgtttaatagaaaaggagaatgtttcagct
actgaaaatgacgatcacatggatgaaacagatagtgatgacgaggttgcaccagagaat
cagaaagtgacttcttcagtaacagaaacagtagccactggatctaaacccagagatgtg
agtcccttgccaagaggcccacctgctcaggttgatagatctgcttggctttcggcctat
cggcataagcaaccagaaaaaatgcccacacaagtaaaaggctatctaacacgagcaaat
caagttagaacagggcttgctacaaagtcctctccttcaagtactgttcaaccttctatc
atgaactttctatcacaaaataaaaggaaacatgaagatagttgcaatcttatttctgaa
gctccagtgctgagaagggaaacatgcttggagcaagtgaggagaacagaactaggagca
aatgcaccagatacactaacctcaagtatatctaatattgttaacacacctcaaggaaca
aatcctttgcggcaccattctccgcaatcttttgtacccgagacaacagaagactcacca
cagtatttggaaccacctaatattttttctcgtactgatgaggtgcctcacttgcatcca
tctgatgttcacactacagaatctgaagcggataaacaacatgatcgacgccattccaag
tgtggttctcctggtagatgttcagaagtggagccccaaaatgaattgacaattatttct
gtgcatgatgctcatcctgatggtcatggcaatgcaatacattctggatccttatctttt
ccggttatgaaatttacacttgctgaccttagaagaagaagaaagcatagttttatgata
tcacatacaaataaagggtgttttcctgagaaaacaacaaggtgttataaagctgcgaca
ctggataataatgtaccagataatgaggaggggaaatcgaaatctttagctgcagccact
agtgagttagacagatttttcagtaaagatgactttggagaaatggaggttgttgggcag
tttaatcttggttttatcattggaaagctggaccatgacctatttattgtagatcagcat
gctgctgatgagaagtacaactttgagaacctttcacagtcaacaactttaaacatacag
ccactccttcaaccactgagactagaactgtcaccagaggaagaagttatcgtttctatg
aacatgagcactatcagaaaaaatggttttgttttagcagaagatgtgcatgcttcacct
tgcaaccgcttttttataaaagctgttccattcagtaagaatattacatttggtgctcaa
gatgtgaaggagttaatctccatgcttgctgacagtcaaggtgactgttcaataatcagc
agttacaagctcgatagaactgattctatttgcccttcgagggttcgtgctatgttggct
tcaagggcttgccgaatgtctactatgataggtgatccattgacaaaagctgagatgaag
aagatacttaagaatttaacaggactgcggtccccttggaattgccctcatgggaggcca
acaatgcgccatctagcagatctccgtactataaaaaatgaaggatggaaggcaactttc
tcatga
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