Oryza brachyantha (malo sina): 102713275
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Entry
102713275 CDS
T02995
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3-like
KO
K14829
pre-rRNA-processing protein IPI3
Organism
obr
Oryza brachyantha (malo sina)
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
obr03009
]
102713275
Ribosome biogenesis [BR:
obr03009
]
Eukaryotic type
Pre-60S particles
5-FMC complex
102713275
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
EIF3I
NBCH_WD40
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_SPT8
Beta-prop_TEP1_C
Beta-prop_VPS8
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_SCAP
Beta-prop_DCAF12
Beta-prop_WDR19_1st
VPS8_N
WD40_RFWD3
Beta-prop_WDR75_2nd
Motif
Other DBs
NCBI-GeneID:
102713275
NCBI-ProteinID:
XP_040379868
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Position
5:8543019..8548405
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AA seq
445 aa
AA seq
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MGGEKEAVLAVCASDAGGVVYDINTGEKIVCIQDCVAPPHGLAFVDGFLLAASRTDKDQP
IFGSAIYFWAPSKIKEVQKSYVAEAIEPIACSKDGVFLVGGARSGHAYIWEIASGALLKR
WRGHKTAISCLAFSQDTSLLISGSIDGTVCTWSMISLFQAEEPRPIEGTEIYLNFYNVKQ
NEHKASITGILTLLRSPCPILITSSLDGNCKVTELMSGILVQTISLSSSVTTIAVDPLEQ
FLLCGAGDAGIYVTVLNEIGTKNSRLTLSEDNCQILSGHRAPISALAFSSEGPRLVSGSQ
DRVILIWDTRTWQVIRKIENKMGGHITNLLVIPKGAISTVHQGRNSLAVKFPKLDKICKP
TNETMTFLRPSQFSDNPVSFQSSNLLAEQILDLEEKRTPEAVEMIIAMNTRDKVKNQTIA
KELVNMNMLVQGQVFDVMDAGADED
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgggaggggagaaagaggcagtgctggcggtgtgcgctagtgatgcaggaggagtggtg
tatgatatcaacacaggtgagaagatcgtgtgcatacaggactgcgtcgctcctccgcat
ggcctcgcttttgttgatggatttctccttgccgcatctcggaccgacaaggatcaaccg
atctttggaagtgctatatatttctgggctccgagtaagatcaaggaggtgcaaaaaagc
tatgtagctgaagccattgagcccattgcttgctccaaagatggggtttttttggtcggt
ggtgctcgatctggacacgcttacatatgggagatcgcaagtggagcattactgaaaaga
tggcgcgggcacaaaactgctataagttgtttagccttctctcaagatacttcccttctc
atctctggctctatagatggcacagtatgcacatggtccatgatcagcttatttcaagca
gaggagcctcggcccattgaaggtacagagatatacctgaatttctataatgtgaagcaa
aatgagcacaaggcgtccataactggcattttgacattgctaagaagcccatgtcccatc
ctaataacgagctcacttgatggcaattgcaaggttacagaactaatgtctgggatacta
gttcagacaatttcactgtccagctcagtgactacgattgcagttgatcctttggaacaa
tttctgctctgcggagctggtgatgctggcatatatgtcactgtgttgaatgaaattggg
acaaaaaattctaggctgacactatctgaggataattgccaaattctttcaggacacagg
gctccaatcagtgcgttagcatttagttctgaaggaccaaggttggtttctggatcacag
gatcgcgttatccttatttgggacacaagaacatggcaagttattaggaaaatagaaaat
aaaatgggtgggcatataacaaatttgctagtcattccaaagggagcgatctcaactgtt
catcaagggagaaattcacttgccgtcaagttccctaaattagataagatatgcaaacca
acaaatgaaacaatgacatttttacgaccatctcaattctccgataacccagtatccttc
caaagttccaaccttctggctgagcaaatcttggatttagaggaaaagagaactcctgaa
gcagtagaaatgattattgcaatgaacactcgagacaaggtgaagaaccaaaccatagcg
aaggagttggttaatatgaacatgctggtgcagggacaggtatttgatgtgatggatgct
ggtgcagatgaggattaa
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