Oryza brachyantha (malo sina): 102713295
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Entry
102713295 CDS
T02995
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1-like isoform X1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
obr
Oryza brachyantha (malo sina)
Pathway
obr03022
Basal transcription factors
obr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
102713295
09124 Replication and repair
03420 Nucleotide excision repair
102713295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
obr03021
]
102713295
03400 DNA repair and recombination proteins [BR:
obr03400
]
102713295
Transcription machinery [BR:
obr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
102713295
DNA repair and recombination proteins [BR:
obr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
102713295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
MRP
Snapin_Pallidin
Motif
Other DBs
NCBI-GeneID:
102713295
NCBI-ProteinID:
XP_040382767
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Position
8:complement(9200671..9210618)
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AA seq
599 aa
AA seq
DB search
MGSMTIGAKYKTTLKDPGTTGVLRMNEDKFTFTPNDPRSAMKLNVDFRSIKGHKFNKVDG
NKPAPPLLNLSKDSDKGGGYIFEFENVTSRDLSRDFVARVLGKQQGTIPPPENSVTSTDP
EQLSAAEMQRRMKLLHEDSELQKLHRKLVIGNILQESEFWATRKNLLDDEANKGSKQRPG
FKSAMLADVRPSADGRTNKVTFSLTTEIIHQIFAEKPAVHRAFLNFVPKKMSEKDFWTKY
FRAEYLLRTKNTVAAAAEAAEDEELAVFLKNDDILAKEARLKIKRVDPTLDMEADAGDDY
IHLPDHGIIRDGSKETIENDGELARRTLSQDLNRHAAVVLEGRSSDVELTDTKTVAEALA
RSKREPPPSSISDDTSHERLVKVARMTEIEDLQAPRSVPYAPLCIKDPREYFDSQQANAL
RSLGGNNDGRHARNCRLSAHDAFDHLLGQISSIKVNGLNYPVVQSDVAFKVLNELNDGIS
RTRRLNLKNPQDSLLGQIPRHTRDELMDHWTAIQELLRHFWSSYPITTSVLYNKVQRIKD
AMTQIYQKLQNIKESAQPDVRHEISQLVKPMTQALDAAFNHELEQQQKSSKSGNKPNGF
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atggggtccatgacgatcggcgccaagtacaagaccacgctcaaggaccccggcaccacc
ggcgtcctccgcatgaacgaggataagttcacattcactcctaatgacccgcggtcggcg
atgaagctcaatgttgatttccggagcatcaaaggtcacaagttcaacaaagtagatggt
aacaaaccagcaccaccattactgaatctttcaaaagactccgacaagggtggaggctac
atatttgagtttgagaatgttactagccgtgatctatctcgtgactttgtagctagagtt
ttaggtaaacaacaaggtacaataccgccccctgaaaattcagttacttcaactgatcca
gaacagcttagtgctgcagaaatgcaacgacgcatgaaattgctgcatgaagatagtgaa
ttgcagaagttacatagaaagcttgttattggcaatatcctgcaagaatctgaattttgg
gcaacaagaaagaatttacttgatgatgaagcaaataaagggtcaaaacaaaggccaggt
ttcaaaagtgcaatgctagctgatgttagaccatcggctgatggtcggacaaataaggtt
acgttcagtctcaccaccgagataattcatcagatatttgcagagaaaccagctgtccat
cgagcctttttaaattttgttccaaaaaagatgtcagaaaaggatttttggacaaaatat
tttagagctgaatatcttcttaggacgaaaaatacagtggcagcagctgctgaggctgct
gaagatgaagaattggccgtcttcctgaagaatgatgatatactagcaaaggaggcaagg
ttgaagataaaacgagttgacccaacattagacatggaggcagatgcaggagatgactac
atccatcttccggaccatgggattatccgtgatggcagcaaagagacaattgaaaatgat
ggtgaattggccaggagaacactttcacaggatctgaatcgacatgcagctgttgtgctt
gaaggaagatcttcagacgtggaattaaccgatacaaagactgttgctgaagcacttgca
aggtccaagcgagaaccacctcctagttctatttctgatgatactagtcatgagagattg
gtaaaggtggcccgcatgactgagatagaggatctgcaagctccacgaagtgttccttat
gcaccactttgtataaaggatcctcgagaatattttgattcccaacaagcaaatgctctg
agatctttgggtggcaacaatgatggaagacatgctcgtaattgtagactgagtgcacat
gatgcatttgatcatttgttgggtcaaatatcttctataaaagttaatggattgaactat
ccagttgttcagtcagatgtggcttttaaggttctgaatgaattgaatgatggaatttca
cggacaagaagacttaatcttaagaatcctcaagatagtctgcttggtcaaatccctcga
catacacgagatgaacttatggatcactggacagctatccaggaattattgcggcatttt
tggtcatcatatccaataacaacttcagttctttataataaggttcaaagaattaaggat
gcaatgacacaaatatatcaaaagttgcagaatataaaggaatcagcgcaacctgatgtg
aggcatgaaatatctcaactagtaaagcccatgacccaggctttggatgctgccttcaac
catgagttggagcagcagcaaaaatcatcgaagtctgggaataagcccaatgggttttaa
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