Oryza brachyantha (malo sina): 102714049
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Entry
102714049 CDS
T02995
Name
(RefSeq) uncharacterized protein LOC102714049 isoform X2
KO
K06100
symplekin
Organism
obr
Oryza brachyantha (malo sina)
Pathway
obr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102714049
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
obr03021
]
102714049
03019 Messenger RNA biogenesis [BR:
obr03019
]
102714049
Transcription machinery [BR:
obr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
102714049
Messenger RNA biogenesis [BR:
obr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
102714049
U7-dependent histone pre-mRNA processing factors
102714049
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
CRM1_C
Motif
Other DBs
NCBI-GeneID:
102714049
NCBI-ProteinID:
XP_015697301
UniProt:
J3L353
LinkDB
All DBs
Position
1:complement(21572278..21590024)
Genome browser
AA seq
1291 aa
AA seq
DB search
MEFAADGARWPEPRGDAAGAPPLERGDAPSPRLDSSRALRLLRELGSNVTEDLAVLMPNL
LSFLKHGDSAVVNQSIASGTNLFAAVLEEMALQINKCGKVDAWLEEIWSWLNQFKDAIHN
LIHEPVPVTTKLFALKFIEIWILCFIPQSRSDRMQPIEGRNRRLFDCSRLSQFHPSLNPA
VLEADANRALILLVDILQSACAHQGSFLVGTINSLAAIAKNRPVYYERILPVLLGFDPNL
EVAKGAHSASLRYSLKTAFLGFLRSPCQAMIESKDTLVRQLRILSPGEATEQIIRQVEKM
NRNIERASRASKDDPSTLDMPYGDVNRKYPAARSSDAFATADGIAKRARFDTSALNPPFQ
GASDYSNIQVDNEANAAHSSDPAPMNSDVSPVEKMIEMIGALLAEGERGAESLGILISTV
EADVMADIVIETMKHLPETSILLATSNGQQQKNQSSSSPLTENLPSNSHSLSYSTQLALP
ADGVSMSMSDVPAMSGAHDSKRDPRRDPRRLDPRRTVAPAPAATTSIHVKGETTGVHQTN
NLSNVPYSVSGKAENSSDYSGDLSRIEDEQQTFCLPNQTFPKENCENLDDALELERKFEV
QAVADVGFRSEVGKEMANPLSPEVTSNNESDSVELEIDPFSPVPKASTPEDTTNHDLPVL
PTHLELSDDEKILLHKLAIRRIIDDYKKNSLNARFSLLAHLIAQSAADDNIMDLIQRHII
FHYHDQGHELAMHVLYQLHSVNVADSPESTTPTSKHYENFFISLARSLIHSLPASDKSFS
KFLCDAPYLPESMLKLLENICVSQGNSQQAKDGDGDRVTQGLGTLWSLILARPPLRQSCL
DIALKCAIHSQDEVRGKAVRLVTKKLYGLTYASERVEQFATESLLAIANKHGVETDINFT
SSKESIPEFEAGSQGTSVSESHTSDGEPSESACDKTDLVSPKQSAVSVSEAKRHTSLFFA
LCMKRPILLQHLFNAYGRSPKVVKQCIHWHIPNLVRNLGSSCSEMLAIIHNPPEGSEELV
TLILQTLTEDSTPSVELVLAVKHLYETKLKDASILIPLLSSFPKEEVLPIFPRLVDLPPD
RFQDALARILQGSAHTGPALTPAEVLIAIHDINPEKDKVALKKVIDACTACFEQRTVFTQ
QVLEKSLNKLVDNVPIPLLFMRTVIQALDAFPALVDFVMEILSRLVNKQIWKMPKLWVGF
LKLAYQTQPRSFDVILQLPPPQLEIALNKYPNLRSPLCSFVNQRNMHNILPRQILKVLGF
INEPQQAPIPFVPAALQTADAASSLPGATLM
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
atggagttcgcggcggacggcgcccggtggccggagccgcgaggcgacgcagccggggcg
cccccgctggagcgtggcgatgcgccttcaccgcgcctcgattcgtctcgcgccctaaga
ttgctgagagagcttggctcaaatgtaacagaagatttggctgtgctgatgccaaatttg
ctgtcatttctgaaacatggcgattctgcagttgttaatcaatctatagctagtgggaca
aatttgtttgctgctgtattggaagagatggcacttcagattaataaatgtggaaaggtt
gatgcttggcttgaagagatatggtcttggctgaaccagttcaaagatgcaatccataat
ctgatccatgagcctgtccctgtcacaactaaactatttgctctaaagttcattgaaata
tggatcctgtgtttcatacctcaatccagaagtgaccggatgcagccaattgaaggaagg
aacagaaggttgtttgattgttcaaggttatctcaattccatcctagcctaaaccctgct
gttctggaagctgatgcaaacagggctctcatcctccttgtggatatattgcagtcagct
tgtgctcaccaaggatccttcctagttggcaccattaattctcttgcagctattgcaaag
aacagacctgtttactacgaacgcatactcccagtgctacttggttttgaccctaatttg
gaggttgcaaaaggggctcattctgcaagtctgcggtattccctgaaaacagccttttta
gggtttctaaggagtccttgccaggcaatgattgagtccaaggacacgctggtaaggcag
cttcgaattctgagtcctggtgaagcaactgaacagattattaggcaggtagagaagatg
aatagaaatatagagcgtgcttctcgtgctagcaaggatgatccttcaacattggatatg
ccttacggagatgttaatcggaaatatcctgctgccagatcaagtgatgcttttgctaca
gctgatggcatagctaaaagagcaagatttgatacctctgctttaaatccaccattccag
ggagcatctgattattctaatattcaggtcgacaatgaagccaatgctgctcattcctct
gatccagctcccatgaatagtgatgtgtctcctgttgagaagatgattgaaatgattggt
gctttacttgctgaaggggaaagaggagctgaatcccttggcattctcatctcgacagta
gaagccgatgtcatggctgacattgtgattgaaacaatgaaacatctacctgaaacttca
attctattagctactagcaacggccagcaacaaaaaaatcaatcttcctccagtcccctg
acagaaaacttgccttcaaactcccactcattgtcctacagtacacagttagcacttcct
gcagatggagtcagcatgtcaatgtcagatgtgcctgctatgtctggcgctcatgattct
aagcgcgacccaagaagagatcctcgtcgccttgatccacgacggacagttgcacctgca
cctgcagctactacttccatacacgtgaagggggaaaccaccggcgtgcatcagacaaac
aacttgtcaaatgtaccctattctgtttctggtaaggctgaaaactcttcagactattca
ggagacctatctagaattgaagacgagcaacaaacattttgtctacccaaccaaacattt
ccaaaggaaaattgtgagaatttggatgatgccttggaactggagcgaaaatttgaagtg
caggcagtagcagatgttggatttcgttctgaagttggtaaagagatggccaatccattg
tctccagaagttacttcaaacaatgaatcggatagcgtggaattggagattgatcctttt
tccccagttccaaaggcatcgactccggaggatactactaatcatgacttgccagttctt
ccaactcatctggaattaagtgatgatgagaaaatcttgttgcataaattagcaattagg
cggataattgatgattacaagaaaaacagccttaacgcaaggttttccctgcttgctcat
ttgattgcgcagagtgctgctgatgacaatattatggatttgattcagagacacataata
ttccattatcatgatcagggtcatgaactagcaatgcatgtgctgtatcagctgcacagt
gtgaacgttgctgattcgccagaaagcaccacacctacttctaaacattacgagaacttc
tttatatcacttgcaaggtccttgattcactcgctacctgcttcagacaaatcttttagc
aaatttctgtgtgatgcaccatacttgcctgagtctatgcttaaattactggagaatatt
tgtgtgtcacaaggaaacagccaacaagcaaaagatggtgatggtgaccgtgttacccaa
ggccttggaaccttgtggagtcttatcttagcgcggcctccacttcgacaatcttgctta
gatattgctctaaagtgtgcgattcactctcaagatgaagtcaggggaaaggcagttaga
ttggttacaaaaaaactctatggactaacgtacgcatcagaaagagtcgagcagtttgcc
accgagagtcttttggcaattgctaataaacatggtgttgagacagacattaacttcaca
tcatcaaaagaatctatacctgagtttgaggcaggcagccagggaacttcggttagtgaa
tcacatacttcagatggtgaaccttctgaaagtgcatgtgacaagactgatttggtttca
cctaaacaatcagcagtatctgtatctgaggccaaacgccatacttcattgttctttgca
ctttgcatgaagaggcccattcttcttcaacatctgttcaatgcgtatggaaggtctcca
aaagttgtcaagcagtgcatccattggcatatacccaaccttgttagaaatttgggatcc
tcatgttctgagatgctagctattattcataatccacctgaaggcagtgaagagcttgtt
accttgatattgcaaactctaacagaagattcaactccttcagtcgaacttgttctggca
gttaaacatctatatgaaaccaagctgaaggatgcatctattctcattccattgttatct
tcatttccaaaggaagaggtgctgccgatatttccaagactagttgatctcccgcctgat
agattccaagatgcacttgctcggatactgcagggatctgctcatactggtccagcttta
acccctgctgaagttctaattgccattcatgatattaatcctgaaaaggataaagttgcc
ctgaagaaggtcattgatgcttgcacagcttgctttgaacagcgcacggtatttacacag
caagttttggagaagtcactgaataaattggttgacaatgtaccaattccacttcttttt
atgagaacagtcattcaagcacttgatgctttcccagctctggttgattttgtcatggaa
atactctcaaggcttgtcaataagcagatatggaaaatgccaaaactgtgggttgggttc
ttaaaattggcatatcagactcagccacgctcgtttgatgttattttgcagttaccccca
cctcaacttgaaattgctttgaataagtaccccaatctgcgaagtcctctttgttccttt
gttaatcagcggaacatgcacaacatcttgcccagacagattttgaaagttctgggcttc
atcaatgaaccacagcaggcaccaattccatttgtgcctgctgcattacaaacggcagat
gcagcctcctctcttcctggtgcaacccttatgtga
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