Oryza brachyantha (malo sina): 102714089
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Entry
102714089 CDS
T02995
Name
(RefSeq) SWI/SNF complex subunit SWI3D-like isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
obr
Oryza brachyantha (malo sina)
Pathway
obr03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
102714089
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
obr03021
]
102714089
03036 Chromosome and associated proteins [BR:
obr03036
]
102714089
Transcription machinery [BR:
obr03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
102714089
Chromosome and associated proteins [BR:
obr03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
102714089
PBAF complex
102714089
GBAF(ncBAF) complex
102714089
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
ZZ
Motif
Other DBs
NCBI-GeneID:
102714089
NCBI-ProteinID:
XP_006652083
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All DBs
Position
4:508525..515843
Genome browser
AA seq
891 aa
AA seq
DB search
MPEEKTREQATMAAKPKPSPSPPSASATPTTYRRKPKRKAKAAKPSPPPKRQARESPPPH
TRQSPLNPAPEDASQLADGEREPPPPPPPPRVQREAPKLRPVKEEVEAVLSRGAGVHVVP
TFAGWFSWKDIHQIEKQALPLFFDGISLQRTPDIYLEIRNFIMKKFHANPQMHLEFKDLS
ELSDGEMDARLEVFEFLSHWGLINFHPFPPAAQEVSALVDTKTNVDTEEKISLVDKLFQF
ETVQSYLITSPNQAEVAAPTHSPSLLSEPTLTEDFITQAESSVEYHCNSCSVDCSRKRHH
CRTQADFDLCCDCYNEGKLDVGMSQTDFILMESAEIPGYGSTSWTDQETLLLLEALEIFQ
AKWSDIAEHVATKTKAQCMLHFLQMPIMDSFLYDGDVSETSQETAVHVSAEHGTSVTEEM
VVAEDKAGIKTNYGKTSAETKFNLTETEGNLDDNVVANNDTKNSGDINVDACSNTGGSNR
SSDTEPIKKETSVENTSNIVNNVLKSAFEAVGHIPKKEDLVSFTEAGNPVMGLAAFLSGL
VDYDDATTLCCSSLKAISHMSPALQLATRHCFILQDPPNDHKDLPVSISPADTDGEQQKD
KDATSNPNGADKDNNLKEGSALSVEEQNTTSTSSKNTRGISTIKESKDECPQGEPKPSSA
NDCDNPIRQVAKSASDNIRGHSRTLLPVSLNNTNESCSISSQETSAGSTKDTSDPGHVDG
GKPIYEDPPLQGKTELNKIEHGVTDLSTLQLHESIRTSSENGNFEDPNSIKDIVVDDVSI
QRLQRAAATAISAAAVKAELLAKQEEYQIQRLAALVIDKQFHKMQAKMSFFTEVQNLFLR
MREHTENTRKKLLMERSAIIASRMAALPPRPNQPGSRLQLGYSLHQQLRRS
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
atgccggaagagaagacgagagagcaagcaacgatggcggccaaacccaaaccctcaccc
tcgccgccgtcggcctccgccaccccgacgacctaccgccgcaagcccaagcgcaaggcc
aaggccgccaagccatccccgccgcccaagcgccaggcccgggagagtccgcccccgcac
acccgccagtcgccgctcaaccccgcgccggaggatgcctcccagcttgccgacggggag
cgcgagccaccgccaccgccgccgccgccgcgcgttcagagagaggcgccaaagctgcgt
ccagtgaaggaggaagtcgaggccgtcctgtcgcgcggagccggcgtccacgtcgtcccc
accttcgccggatggttttcatggaaggacatccaccaaattgaaaagcaagcattgcct
ttgttttttgatgggatatcattacagaggacacctgacatatatttggaaattagaaat
tttattatgaagaaatttcatgctaatcctcaaatgcatttggagttcaaagatttgtct
gagttgtctgatggggagatggatgctcggttggaagtcttcgagttcttgtcgcactgg
ggtttgatcaacttccacccttttccaccagctgcacaggaggtgagtgcactggttgat
accaaaacaaatgttgatacagaggagaaaatttctctagtggacaagttatttcagttt
gaaacagttcagtcgtatctcattacttctccgaaccaagcagaggtggcagctccaact
cattcccctagcttgctttctgagcctacgttaactgaagattttattacccaagccgag
tcttctgttgagtatcactgcaactcttgttcagttgattgctcaaggaagcgccaccat
tgcagaactcaggcagactttgacttatgttgtgactgctataacgaaggaaagttggat
gtaggcatgtcacaaactgatttcatccttatggaatctgcagaaattccaggttatggt
agcactagctggactgaccaggagaccttgcttcttttggaagctttagaaattttccaa
gcaaaatggagtgacattgctgagcatgttgctacaaaaaccaaagcacagtgcatgcta
cacttccttcaaatgccaattatggactcgtttttgtatgatggagatgttagtgaaaca
tctcaggaaactgcagtacatgtctcagcggaacatggtacttctgtaactgaggaaatg
gtggtagccgaagacaaagcaggaattaaaactaattatggaaaaacttctgcagaaaca
aaatttaatttgacagaaacagaaggaaacctagacgataatgttgttgcaaataatgat
accaagaattcaggtgatatcaatgtggatgcatgtagcaacactggtggatcaaataga
tcttcagatactgaacctataaagaaggaaacttctgtagaaaatacatcaaacattgtt
aataatgtcctgaaatctgcttttgaagctgttggtcacattccaaagaaagaggacttg
gtttcatttactgaagcaggaaatcctgtcatgggactggcagcatttctatctggcctt
gtggattatgatgatgctactacattgtgctgtagttcgctgaaagctatatctcatatg
tctcctgctcttcaactggcaacaaggcattgctttattcttcaagatccaccaaatgac
cacaaagatctgccagtcagtataagccctgcagacacagatggtgagcaacaaaaagac
aaggatgctacttcaaatccaaatggtgctgacaaggacaacaatttaaaagaagggtct
gctttatctgtggaagagcaaaatactacatccacttcatcaaaaaacaccaggggcata
tctaccataaaggaatctaaggatgaatgtccccaaggggagcctaaacccagtagtgct
aacgattgtgacaatccaattaggcaggtggcaaagagtgcatctgataatataagagga
cacagtcgcactttgcttcctgtcagtctgaataatacaaatgaatcttgttccatatct
tcccaagagaccagtgcaggaagcacaaaggacacgagtgatccaggacatgtagacggg
ggtaaaccaatttatgaggatccaccattacaaggaaagacagaattgaacaagatcgag
catggagtcactgacttatctactctacagctacatgagtccatccgaacaagttcagaa
aatgggaactttgaagatcctaacagtattaaggacattgttgtcgatgatgtttccata
caaagactacagcgggcagcagctactgctatttcagcagctgctgtgaaggctgagctc
cttgcaaagcaggaggaatatcaaatccagcgattagctgcacttgtgattgataagcag
ttccacaagatgcaagcaaaaatgtcctttttcactgaagtacagaacttgttcttacga
atgagggagcacaccgaaaatacccggaagaagcttctgatggagaggagtgctataatc
gcttctcggatggcagcactgccacccagaccaaaccaacctgggagcagattacaatta
gggtatagtctgcatcagcaactgaggcgatcttga
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