Oryza brachyantha (malo sina): 102714261
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Entry
102714261 CDS
T02995
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
obr
Oryza brachyantha (malo sina)
Pathway
obr03440
Homologous recombination
obr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
102714261
03450 Non-homologous end-joining
102714261
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
obr03032
]
102714261
03400 DNA repair and recombination proteins [BR:
obr03400
]
102714261
DNA replication proteins [BR:
obr03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
102714261
DNA repair and recombination proteins [BR:
obr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
102714261
BRCA1-C complex
102714261
NHEJ (non-homologous end-joining)
MRX complex
102714261
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SMC_N
AAA_21
AAA_15
SbcC_Walker_B
Rad50_zn_hook
AAA_29
ABC_tran
AAA_16
AAA_13
AAA_22
Motif
Other DBs
NCBI-GeneID:
102714261
NCBI-ProteinID:
XP_006647285
UniProt:
J3LD12
LinkDB
All DBs
Position
2:complement(13273570..13289765)
Genome browser
AA seq
1316 aa
AA seq
DB search
MSTVDKMLIKGIRSFDPENKNVITFFKPLTLIVGPNGAGKTTIIECLKLSCTGELPPNSR
SGHTFVHDPKVAGETETKGQIKLRFKTATGKDVVCIRSFQLTQKASKMEFKAIESVLQTI
NPHTGEKVCLSYRCADMDREIPALMGVSKAILENVIFVHQDESNWPLQDPSTLKKKFDDI
FSATRYTKALEVIKKLHKDQAQEIKTFRLKLENLQTLKDQAYRLRDNIAQDQEKSDALKI
QMEELRTNIQGVEDKVRRTEKSLTDLRGLQQEIKSGSSARTTYFTLQQQQYAALSEENED
TDDELREWQMKFEERIASLDIKISKLQRDVDDENTTRSSLDEAINGLSQDIGRLQAEADA
HMSLKRERDTTIRKISTKHNLGPIPDAPLTDAAAMHLTNTIKAKLSNLNDDLQDKKKSNE
AQKQFLWGRYLEVNTRYSEVVGQIESKVASKKGISRRMKDKENERDAAELDLSKHNLPRI
DEKERYLQIEVERKALALGDRNYDLIITQKRTEIFSLDEKIKALQREKDNIMSDSNDRVL
LDLKKDELEQCKKKIKKIVDEHENKIRSVLKGRLPSEKDLNKEISPVFGSVEREYDDLNS
KSREAEQELKLVQMKIRDARSHLSKLQKELDAKRSYVESKLRSITKISADIDMFPKLLKD
AQEERDKQKNNFNLAKGMREMYDPFEKVAREHHMCPCCQRAFTPEEEDQFVKKQRTTCAT
TAERMNMMALECSKAEEFFQQFNNLQSTYDEFVKLGKETIPLGENNLKQLLADECEKAQT
FDDLVSVLAQVKMDKDAVHVLLQPIETIERHIQEIHQLEPQVQDLEYKLDCRGQGVKPLE
QIQLELNSVQRTRNTLNNEVDDLRDQQRTLTDDLTNAQMRWHDVREEKLKASGAVLRFKK
AEEDLERLAEEKEDLTLEEKHLEEALGPLSKERANLMQEHEALKEKLDQEYHQLAERKME
FQQEIDALEAHNDRIKEYLNSKKDEKLKSLHEKRAQKQSDLQKCKETKNEKETELKRSQE
LLQSQDQLKRNIDDNLNYRKTKAEVERLTREIELLEEKAISIGSLHTIEADLKQHSQEKE
RLLSEYNRCQGTQSVYQSNISKHKLELKQTQYKDIEKRYFNQLLQLKTTEMANKDLDRYY
AALDKALMRFHTMKMEEINKIIKELWQQTYRGQDIDYISINSDSDGAGSRSYSYRVVMQT
GDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALL
RIMESRKGQENFQLIVITHDERFAQLIGQRQLAEKYYRVSKDEHQHSKIEAQEIFD
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atgagcacggtggacaagatgctgatcaaggggatccggagcttcgacccggagaacaag
aacgtcatcaccttcttcaagcccctcaccctcatcgtcggccccaacggcgccggcaaa
accacgatcatcgagtgcctgaagctctcctgcaccggcgagctgcccccgaactcccgc
tccggccacaccttcgtgcacgaccccaaggtggcaggtgagacggagacaaaagggcag
attaagctgagatttaagacggcaacaggaaaggacgtggtgtgcatccgctccttccag
cttactcagaaggcatcaaaaatggagtttaaagcaatcgagagtgtcctacagactata
aatccacacacgggcgagaaggtctgtctcagctacagatgcgctgatatggatagggag
attccagctttaatgggtgtttcaaaggctatactggagaatgttatatttgtgcaccaa
gatgagtccaattggccattgcaggatccatcaacacttaagaaaaagtttgatgacatc
ttttctgccacccgttataccaaagctctcgaagtcataaaaaaacttcacaaggaccaa
gcacaggagatcaagacttttaggttaaagctggagaacctccagactctaaaagatcaa
gcatataggctccgtgacaatattgctcaagatcaggagaagtcagatgccttaaaaatc
caaatggaggaattgagaacaaacatccaaggtgttgaagataaagttcgccgcacggaa
aaaagtttgactgacttgagggggctccaacaggaaattaaatccggttcatcagctaga
actacatattttacacttcagcagcaacagtatgctgctctttctgaggaaaatgaagat
actgatgatgaactaagagagtggcaaatgaaatttgaagaaagaattgcatcactggat
attaagatcagtaaactacaaagagatgtggatgatgaaaatacaacgagatcctccctg
gatgaggccataaatggtttgtcgcaagatataggaaggctccaggcagaagctgatgct
cacatgtcactgaagcgtgaacgggacacaaccatcagaaagatctccaccaaacataat
cttgggccaattcctgatgctcctttaaccgatgctgctgccatgcaccttacaaacaca
atcaaagcaaaactgtcaaatcttaacgatgatttgcaggataagaagaaatctaatgag
gcacagaagcagtttctctggggacgctatcttgaagtaaatactcgctactctgaagtt
gttggccagatagaatctaaggttgcctccaagaaaggtatttcaagacgcatgaaagat
aaagagaatgaacgtgatgctgcggaattggacctttcaaagcataatctgccccgtatt
gatgaaaaggagagatatctgcaaattgaagttgagaggaaagctcttgccctgggggac
aggaactatgatttgattataactcagaagcgcacagagatatttagcttggacgagaag
ataaaagcacttcagcgggaaaaagataacataatgagtgattccaatgacagagtactg
ctagacttgaagaaggatgagttggaacaatgcaagaagaaaattaagaagatagttgat
gagcatgagaacaaaatcagaagtgttcttaagggccgtcttccttcagagaaggatctt
aataaggagatcagtccagtctttgggtctgtagaaagagaatatgatgatttgaactca
aaatctcgggaagcagagcaagaattgaaattagtgcagatgaaaatacgtgatgctagg
agccacttatcaaagcttcaaaaggaattggatgcaaagagaagctatgtggagtccaaa
cttcgatccattacaaagatttctgctgacattgacatgtttcccaaacttctgaaagat
gcccaggaagaaagagataaacagaaaaacaacttcaatttagcgaagggaatgcgggaa
atgtatgatccttttgaaaaagtggctcgtgagcaccacatgtgcccttgctgtcaacgc
gctttcacacctgaggaagaggatcaatttgtaaagaagcaaaggacaacatgtgcaact
actgcagagcgcatgaacatgatggctttggaatgctcaaaggctgaagagttcttccag
caattcaataacctccagtcaacctatgatgaatttgtgaagctgggaaaagagactata
cctttaggagagaataatttgaaacaacttttggcagatgaatgtgagaaggcacaaaca
tttgatgatcttgtcagtgttcttgctcaagttaaaatggacaaggatgcagtgcatgta
ttgctacagccaattgaaacgattgagaggcacatacaggagatacatcaattagaacca
caagttcaagatcttgaatataagcttgattgtcgtggccaaggtgtgaaacctttggag
caaatccagctggagttgaactctgtgcagaggacaaggaacacattgaataatgaagtg
gatgatctaagggatcaacaaagaacactgactgatgatctgaccaatgctcagatgcga
tggcacgatgttagggaagagaagctaaaagcttcaggtgctgtgctaagatttaaaaaa
gctgaagaggatttggaacgtctagctgaggagaaagaagatctaaccttagaagagaag
catttagaagaggctcttggtccattgtctaaagaaagagcgaacttaatgcaagagcat
gaagctttgaaagaaaaacttgatcaggagtatcatcagctggcagaaagaaaaatggaa
ttccagcaggaaattgatgcactcgaggcacacaatgatcggatcaaagagtacctgaat
tcaaagaaggatgagaagcttaagtcactgcatgaaaagcgtgctcaaaaacagtctgat
ctacagaaatgtaaggaaacaaagaatgaaaaagagacagagttaaagcggagccaagag
ctattgcagagccaagatcaattgaaaagaaacattgatgacaaccttaactacaggaaa
acaaaggctgaagtggaacgactcactcgtgaaatagaattacttgaggaaaaagcaatt
tccattggtagcctgcatactatagaagctgatcttaagcaacattcacaagaaaaagag
aggcttctttcagagtataataggtgtcaaggaacacagtctgtttatcaaagtaatatt
tcaaaacacaagcttgaacttaaacagacgcaatacaaggatatcgagaagcgatacttt
aaccaacttcttcagctaaagacaactgagatggcaaacaaggacttggaccgatactat
gctgcattggataaggctcttatgcggttccacactatgaaaatggaggagataaacaaa
ataattaaggaattgtggcagcagacttatcggggccaagatatcgactatataagcatt
aattctgattctgatggtgctggctctcgatcatacagctatcgtgttgtcatgcaaaca
ggtgatgctgaactggaaatgagagggcgctgcagtgctggccagaaggtgcttgcttct
cttataatcagactggcattggcagaaacattctgtctgaactgtggcatattagctcta
gatgagcccaccactaatctagatgggcctaatgcagagagcctcgctgctgcccttttg
agaataatggagagcaggaaaggacaggagaacttccagctgattgtaatcacccacgac
gagaggtttgctcagcttattggccagagacagctcgccgagaaatactaccgagtctcc
aaggatgaacaccagcacagcaaaatcgaagcccaggagatatttgactga
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integrated database retrieval system
