Oryza brachyantha (malo sina): 102714290
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Entry
102714290 CDS
T02995
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
obr
Oryza brachyantha (malo sina)
Pathway
obr03022
Basal transcription factors
obr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
102714290
09124 Replication and repair
03420 Nucleotide excision repair
102714290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
obr03021
]
102714290
03036 Chromosome and associated proteins [BR:
obr03036
]
102714290
03400 DNA repair and recombination proteins [BR:
obr03400
]
102714290
Enzymes [BR:
obr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
102714290
Transcription machinery [BR:
obr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
102714290
Chromosome and associated proteins [BR:
obr03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
102714290
DNA repair and recombination proteins [BR:
obr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
102714290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
HBB
ResIII
DEAD
NAMPT_N
Motif
Other DBs
NCBI-GeneID:
102714290
NCBI-ProteinID:
XP_006654036
UniProt:
J3M3X5
LinkDB
All DBs
Position
5:complement(2024276..2029310)
Genome browser
AA seq
758 aa
AA seq
DB search
MKFDLEGLTVHFPYAAIYPEQHAYMGELKRALDARGHALLEMPTGTGKTAALISLITSYS
LANPSRPLRLIYCTRTVHEMEKTLAELRLLFAHLPPAASRSLLALGLSSRKNLCVHPQAS
AAAARDSVDTACRRLTASWVRDKAASDPDSTPLCDFFESFDRAATAGDLASYMPPGVYTL
ADLRALGRDRRICPYFLARQMVKYANVVVYSYQYLIDPKVSSIVSREMQKECVVVFDEAH
NIDNVCIEALSVSIRKQTLEGAERNLRRISHEIDRFKATDANRLRAEYNRLVDGLAQRGN
LPISDTWLANPALPDDILKEAVPGNIRRAEHFLAVLRRLVRFLDGRLDTENVENEMPVAF
VASIHSQAGIDQKMLRFCYDRLHSLMLTLEITDTDEFMHIQTICDFATLIGTYTRGFSII
IEPYDERMPDIRDPVIQLSCHDASLAIQPVFERFQTVVITSGTLSPIDLYPRLLNFNPVI
SRSFTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGRLLLEMAAAVPDGIVC
FFVSYSYMDGIVNSWNEMGILQDIMQHKLVFIETPDVVETTLALDNYRKACDCGRGAIFF
SVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSRILLARLEYLRETFQIKEGDFLTFDAL
RQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLHDAHLNLSTDMALHIA
REFLRRMAQPYDKTGSGGSKTLLTEEDLQKMAQDAMEM
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttgacctggagggcctgacggtgcacttcccgtacgcggcgatctacccggag
cagcacgcgtacatgggggagctgaagcgcgccctcgacgcgcggggccacgcgctgctc
gagatgccgacgggcaccggcaagacggcggcgctgatctccctcatcacgtcgtactcc
ctcgccaacccgtcccgcccgctccgcctcatctactgcacccgcacggtgcacgagatg
gagaagaccctcgccgagctccgcctcctcttcgcccacctcccgccggccgcctcccgc
tccctcctcgcgctcggcctctcctcccgcaagaacctctgcgtccacccccaggcctcc
gccgccgccgcccgcgactccgtcgacaccgcctgccgccgcctcaccgcctcgtgggtc
cgcgacaaggccgcctccgacccggactccaccccgctctgcgacttcttcgagtccttc
gaccgcgccgccaccgccggtgacctcgcctcctacatgccccccggggtctacaccctc
gccgacctccgcgccctcggccgcgaccgccgaatctgcccttacttcctcgcgaggcag
atggtcaagtacgccaatgtcgtggtctacagctaccagtacctgatcgaccccaaggtg
tccagcatcgtgtccagggagatgcagaaggagtgcgtcgtcgtcttcgacgaggcgcac
aacatcgacaacgtctgcattgaggctcttagtgtcagcatccgcaagcagacgcttgaa
ggcgctgaacgaaacttgcggcgcatctcacacgagatcgataggttcaaggccaccgat
gccaataggcttcgtgctgaatacaacaggctggttgatggattggcacagaggggaaac
ctaccaatatcggatacttggctcgcgaacccagccttgcctgatgacattctgaaggaa
gctgtaccaggaaacatcaggagggctgagcatttccttgctgtactgcgaaggcttgtc
agattcctagatggacgcctggatacagagaatgttgagaatgaaatgcctgttgccttt
gttgcttcaatccattctcaggctggaatcgaccagaaaatgttgagattttgttatgac
cgactgcactctctaatgcttaccttggagataaccgatacagatgagttcatgcacatc
caaacaatctgtgactttgccacattgattggaacttatacgcggggcttttctataata
atagaaccctacgatgagagaatgcctgatatccgtgatcctgtgattcagctcagttgc
catgatgcttcactcgcaatacaacctgtttttgagcgtttccaaacggttgtcataact
tctggaactctcagcccaatagacctctatcctcgacttctgaattttaatcctgttata
agtaggagcttcacgatgtccttaacaagggattgcatatgtcccatggtcttgacaaga
ggaagcgaccagctacctgtcagcacgaagtttgatatgcgtagtgatcctggcgttgtg
aggaactatggtcggctcttgctggagatggctgctgctgttccagatggcatagtttgt
ttttttgtcagttattcttatatggatggcattgtcaacagctggaatgagatgggcatt
ttacaggacatcatgcagcataagttggtattcatcgaaacaccagatgttgttgagaca
acactggcccttgataattacagaaaggcatgtgattgtggaagaggtgctatattcttt
tctgttgccagaggcaaagttgctgaaggtattgattttgatcgacactatggcagactt
gtgatcatgtttggtgttcctttccagtacacactcagcaggatattacttgctaggtta
gagtacctaagagaaacttttcagataaaggagggtgacttcctgaccttcgatgcattg
aggcaagctgcacaatgtgttggccgtgtgattcgttctaaagcagactatggaatgatg
atatttgctgacaagagatacagtcgacatgataaacggtctaaacttcctgggtggata
ttgtcgcacttgcatgatgctcacctaaatctgagcactgatatggctttgcatatagcc
cgtgagttcctccggaggatggcacagccttacgacaagacggggagcggcggcagcaag
accctcttaaccgaggaggatttgcagaaaatggcacaggacgccatggagatgtga
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integrated database retrieval system
