Oryza brachyantha (malo sina): 102714353
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Entry
102714353 CDS
T02995
Name
(RefSeq) probable RNA helicase SDE3
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
obr
Oryza brachyantha (malo sina)
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obr03019
]
102714353
03036 Chromosome and associated proteins [BR:
obr03036
]
102714353
Enzymes [BR:
obr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
102714353
Messenger RNA biogenesis [BR:
obr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
102714353
Chromosome and associated proteins [BR:
obr03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
102714353
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
MOV-10_beta-barrel
AAA_30
AAA_19
ResIII
UvrD-helicase
AAA_22
AAA_16
UvrD_C_2
AAA
SLFN-g3_helicase
Mov-10_helical
DEAD
ATPase_2
bCoV_S1_RBD
Helicase_RecD
Mg_chelatase
AAA_24
Motif
Other DBs
NCBI-GeneID:
102714353
NCBI-ProteinID:
XP_006649435
UniProt:
J3LK82
LinkDB
All DBs
Position
3:complement(2656580..2661352)
Genome browser
AA seq
960 aa
AA seq
DB search
MGTYLRNYSDDEYSVAGEKPDVEFMDYQNDGSLQDYSLDDGPVVVTIPFPFIKGKPKSVL
VGETSADTISIENTSSEPLDVWSVRIFSSNPEDSYVLSMMKPPLSDADEEAKKNFLGLTS
VEDRTLQPEQTLTIWLSCTPKDIGLHTSIVHVDIGDEKIERVAFLLADDNVSQALFSDKP
YSRRHTQKKTFESTSFVPGCRPTRQHSQGFKYKLPQFAIPADIRELIESKQRPDVLSEEL
DMTNYAKFFSTLLVMEEIHLEEEMRSYDMEHVLMRRRGNEFLSLEVPGLAERRPSLVHGD
YIFARHAGSDVRPYQGFIHKVEADEIFLKFDSQFHLAHRDRNQYDVSFTYNRLNMRRLYK
AIHEAEILGPDIFFPRRSSYGSTKKWSFKPLNPHINTEQADAVSTILGYRGVAPYVIYGP
PGTGKTMTLVEAILQLYTAKRRANVLICAASNSAADHVLAKLLQASYLIRPSDIFRLNAS
SRQYEDVDPNFIRFCFFQDTVFKCPPMQALLRYKIVISTYMSSSMLQSEGIRRGHFTHIF
LDEAGQASEPEAIVPLSGLCGKETVVVLAGDPMQLGPVVFCKQAEKDGLGKSYLQRLLFE
YEQYSTGGPNYVTKLVRNYRCHPAILELPSELFYGGQLIACKEKEVSSIYDCIDLPNKAF
PVLFVGIQGCDEREGNNPSWFNRIEASKVVNIIRKLTRGGDVREGDIGVITPYRQQVVKI
KKALESFEMPDLKVGSVEQFQGQEREIIIISTVRSTVKHNEFDKFFNLGFLSNHRRFNVA
ITRAKSLLIIVGNPHIITKDRHWDRLLRYCADNGSYQGCPLPPPEETPEDTRVSGFRDSQ
DEPAGWGYKQEEESANYNYKQDPSDSSCGHTNGLPSTENEAEWSERTPDEEQQRLSSAAE
ADSPEVMLKQNAEEHVEHDGVQPEQCPANDNLVQDAYAAKYSFPPEWCDVSNVPATGWDD
NT seq
2883 nt
NT seq
+upstream
nt +downstream
nt
atgggtacctatcttaggaactattcagatgatgagtactctgtggctggtgagaagcca
gatgtagagttcatggattatcagaatgatggctctcttcaggattattcacttgacgat
ggacctgtggttgtcacaattcctttcccattcattaagggcaaaccaaaatctgtcctt
gttggagaaacatctgctgacaccattagcatagaaaatacctcttctgaacccttagat
gtgtggagtgtgagaatattttcttctaatccagaagacagttatgtgctctctatgatg
aaaccgccactgagtgatgctgatgaggaggcgaagaagaatttccttgggttgacttct
gtggaagatcgtacactccagcctgagcaaacccttacaatttggctctcttgtacgcca
aaagatattggcttgcatacatcaatcgtgcacgttgatatcggcgatgagaaaattgag
cgtgtagcctttctattggcagatgataatgtttcccaggctttattttctgacaaaccc
tattccaggagacacactcagaagaagacatttgagtcaacttcatttgtgccaggttgt
cggccaactcggcagcacagtcaaggattcaagtataagctccctcagtttgcaatacct
gcagacatccgcgaactcattgaaagtaaacagagacccgacgtcctatctgaagagttg
gacatgacaaactatgcgaaattttttagcactcttttagtcatggaagaaattcatttg
gaggaggagatgagatcatatgacatggagcatgtcttaatgaggaggagaggcaatgaa
tttttgtcacttgaggtccctggcttggctgaaagaaggccttcactagttcatggagat
tatatatttgccagacatgctggaagtgatgttcggccttatcaaggcttcattcacaag
gttgaagcagatgaaatatttttgaaatttgatagccagttccaccttgctcaccgtgat
aggaatcaatatgatgttagcttcacatataatagactcaacatgagaaggctctacaag
gctatccatgaagcagaaattttgggacctgacattttcttcccccgtcgatcatcctat
ggaagtacgaagaagtggtcatttaaacctctaaatccacacataaacactgagcaagct
gatgcagtttcaacaatacttggctaccgaggggttgcaccttatgtgatatatggacct
ccaggcactggcaagaccatgacgcttgtggaggctattttgcagctttatacagccaag
aggagggcaaatgttctcatatgcgctgcttctaatagtgctgcggaccatgttttggca
aagcttcttcaggctagttatctgattcgcccaagtgatatatttaggctaaatgcttcc
agccgtcaatacgaggatgtcgatcctaattttatccggttttgcttctttcaagatacg
gtgttcaagtgtcctccaatgcaagcactactgcgatacaagatagttatatcaacctac
atgagttcatcaatgctgcaatccgaaggcattcgtcgggggcatttcacacacattttt
ttggatgaggctggtcaagcctctgagccagaggccatagttcctttgtcaggtttgtgt
ggaaaagagactgttgttgttttagcaggagatcccatgcagttaggaccagtggttttt
tgtaaacaagcagagaaggatggtttggggaaatcatatctgcaaaggctgctatttgaa
tacgagcagtacagcacagggggtcctaactatgtaacaaagctagtgaggaattatcgg
tgccatccagcaatcctcgaattgccatcagagcttttctatgggggtcaattaattgcc
tgtaaagaaaaagaagtgtcatctatatatgactgcattgatcttcctaacaaggcattc
cctgttctttttgttggcattcaagggtgcgatgagagggaaggaaataatccttcatgg
ttcaatagaattgaggctagtaaagtagtaaacatcatccgaaagctgacaaggggtggt
gatgttcgtgaaggtgacataggagtcattactccatatcgtcaacaagttgtcaagata
aagaaggcccttgaatcatttgaaatgcctgacttgaaagtgggaagtgtggagcaattc
cagggtcaagagagggaaataataatcatctctacagtcaggtcaacagtaaagcataat
gagtttgacaaattcttcaacctgggattcttaagcaatcacagaaggttcaatgttgct
atcacacgagccaaatcattgctcattatcgttggaaaccctcacattatcactaaggat
cgacattgggataggctcttgaggtattgtgcagacaatggttcttatcaaggatgccca
cttccaccaccagaagagactccagaagacaccagagtctctggatttcgtgacagccaa
gatgaacctgctgggtggggttacaaacaagaagaagaatctgccaactacaactacaag
caagacccatccgactctagttgtggacatacaaatggtttgccatccactgaaaatgaa
gcggaatggtctgagagaactccagatgaggagcagcaacgacttagcagcgctgctgaa
gcagactctcctgaggtgatgctgaagcagaacgctgaggaacatgttgagcatgatggt
gtacagcctgagcaatgcccagccaacgataatctagtccaagatgcgtatgcagcgaag
tactcttttcctcctgaatggtgtgatgtttcaaatgtccctgcaacaggctgggatgat
tga
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