Oryza brachyantha (malo sina): 102714446
Help
Entry
102714446 CDS
T02995
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
obr
Oryza brachyantha (malo sina)
Pathway
obr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102714446
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obr03019
]
102714446
03012 Translation factors [BR:
obr03012
]
102714446
Enzymes [BR:
obr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
102714446
Messenger RNA biogenesis [BR:
obr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
102714446
Translation factors [BR:
obr03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
102714446
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
dsrm
AAA_22
nSTAND3
ATPase
AAA_19
ABC_tran
T2SSE
AAA_23
NACHT
ATPase_2
Motif
Other DBs
NCBI-GeneID:
102714446
NCBI-ProteinID:
XP_015690713
UniProt:
J3LSU1
LinkDB
All DBs
Position
3:complement(25353417..25360309)
Genome browser
AA seq
1151 aa
AA seq
DB search
MRGGLRRGLGVLLIPLSSSPSRAPRPPVPLAALVLFQRRLDAVSRRSFCSSGGGHAVEQF
SDDEYDHEYEDHRPSSSVTNIDEWRWKLSMLQRNAEEQEIISRDRRDRRDYDQIANLAKR
MGLYSEMYGRVIVASKVPLPNYRPDLDDKRPQREVVIPLGLQRRVEGLVQEHLDRALLPM
DKGRMGNGSEMAEKDETVNLDEQQDSLLDRSVMEKILQRKSIRMRNFQRSWQESPEGVKM
LEFRRSLPAYKEKEMLLAAIARNQVIVISGETGCGKTTQLPQFVLESEIESGRGAFCNII
CTQPRRISAMAVAERVSTERGENLGESVGYKVRLEGIKGKDTHLLFCTSGILLRRLLSDR
NLNGVTHVFVDEIHERGMNEDFLLIVLKDLLSRRRDLRLILMSATLNAELFSSYFGGAPT
IHIPGFTYPVRAHFLEDILERTGYKLTSNNQLDDYGQDKVWKTQRQLLPRKRKNQITMLV
EDALKTSSFETYGSRTRDSLSNWNPDCIGFNLIEAVLCHICRKERPGAVLVFMTGWDDIS
CLKDQLKAHPLLGDPNRVLLLACHGSMATAEQRLIFEKPPPNVRKVVLATNMAEASITIN
DIVFVVDCGKAKETTYDALNNTPCLLPSWISKASARQRRGRAGRVQPGECYHLYPRCVYD
AFADYQLPELLRTPLNSLCLQIKSLQVGSIGEFLSAALQPPAPLAVQNAVAFLKMIGALD
ENENLTDLGRYLSMLPVDPKLGKMLIMGAVFRCIDPVLTVVAGLSARDPFLLPQDKRDLA
GTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTLQAIHSLRKQFSY
ILKDAGLIDSDASTNNSLSHNQSLVRGIICSGLFPGISSVVHRENSMSFKTMDDGQVLLY
ANSVNAKYQTIPYPWLVFGEKVKVNAVFIRDSTGVSDSILILFGGAVTKGSMAGHLKMLD
GYIDLFMDPRLSECYLQLKEELDKLVQKKLEDPSFDIHKEGKYILYAAQELAAGDLCEGR
FVFGRETSRARLSSNGDTKSNIEKDGMNPKSLLQTLLMRAGHTPPKYKTKHLKTNDFRAI
VEFKGMQFAGKPKRNKQLAERDAAIEALGWLTQTSGTKLQDDGDDSPLDLTDNMLKLLNR
PRRRSKNNSRR
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atgcgcggcggcttgcgccgcgggttgggcgtcctcctcatcccactctccagctcgccc
agccgggcgccgcggccgccggtgcccctcgcggctctagtactcttccagcgccgcctc
gatgccgtctcccgtcggtccttctgcagctccggcgggggccacgccgtggagcagttc
tccgacgacgagtacgaccacgagtacgaggatcaccggccgtcgtcgtcggtgacgaac
atcgacgagtggaggtggaagctgagcatgctgcagcgcaacgcggaggagcaggagatt
atctccagggaccggagggaccgccgggactacgaccagatcgccaatctcgccaagagg
atgggactctacagtgagatgtatgggagggtcattgttgcaagcaaggtcccgctgccg
aattacaggccagacctggacgataagcggccacaaagagaggtggtgattccattaggc
ttacagaggagggtcgaaggacttgtgcaggagcaccttgatcgtgcactcttgccaatg
gataaaggcagaatgggaaatggttctgagatggctgagaaagatgagactgtgaacctg
gatgagcagcaggactctcttctcgaccgatcggtcatggagaagatccttcagaggaag
agcatacggatgcgcaatttccagagaagctggcaggaatcacctgaaggtgttaagatg
ctagaattccggagatcacttcctgcatacaaggaaaaggaaatgcttctagcagccatt
gcacgcaatcaggttattgtgatatcgggagagacagggtgtggcaaaacaacccagttg
cctcaatttgtattagagtcagagatagaatctggccgcggggccttttgtaatataatc
tgcacacaacctcggagaatttctgcaatggcagttgcagagagagtatccactgagaga
ggagagaatcttggtgaatcggttggctataaagttcgattggagggaatcaaaggaaaa
gacacacatttgcttttctgcaccagtggtattttactaagacgattgctcagtgacaga
aacttgaatggagtgactcatgtatttgttgatgaaatacatgaaagaggcatgaatgaa
gatttcttattgattgtactaaaagacctattatcacgacgccgtgatttgaggttgata
ttgatgagtgctactctaaacgctgaactgttctcaagttattttggaggagcgccaact
attcacattcctggattcacatatccagtgagggcgcattttctggaagatatattagag
aggactggctataagttgacctcaaataatcaacttgatgattatggacaggataaagtc
tggaaaactcagaggcaactactacctagaaaaaggaaaaatcagattacaatgcttgtt
gaggatgcccttaaaacttctagctttgagacctacggttcaaggacacgtgattctctg
tcaaattggaatcctgattgcataggatttaaccttatagaagctgttctttgtcacata
tgtcgtaaagaacggccgggtgcagttttagttttcatgaccggatgggatgatatcagt
tgcttgaaggatcaactaaaagcacacccattgctgggtgaccctaacagagttctactg
cttgcatgccatggttccatggctactgctgagcagaggttaatctttgagaagccacct
cctaatgttcggaaggtagtgcttgccactaacatggcagaagcaagtattacaataaat
gatatagtttttgtcgtggattgtggaaaagcaaaggaaacgacatacgatgcactaaat
aacactccctgcttgcttccctcctggatttcaaaggcttctgctcgtcagaggagaggc
agagctggtcgtgtgcaacctggagaatgctatcacctgtaccctagatgtgtgtatgat
gcatttgcagattaccagcttcctgagctccttagaactcctttgaattcactatgtttg
cagataaaaagtttgcaagttggcagcattggggagtttctatcagctgccttacagccc
ccagcaccactagctgtccaaaatgcagtggcattcctgaagatgattggagcattagat
gaaaatgagaacctaactgatctaggaagatacctttccatgcttcctgttgatccaaag
ttagggaagatgcttataatgggtgcggttttccgctgcatcgatcctgtactcacagtg
gttgctggattgagtgcccgcgatcctttcctgttgccacaggacaagagagatttggca
ggaaccgcaaaatcaagattctcagcgaaagattatagtgatcatatggccctagtccgt
gcttacgaaggatggaaggatgcagagagagaaggttctgcttatgaatactgctggaga
aatttcctctctgctcaaacacttcaagccattcactctcttcggaagcaattcagctat
atcttaaaggatgctggtttgatagactctgatgcaagtacaaataatagtttgagccat
aatcaatcattggtccgtggtatcatatgttctggactttttccgggcatatcatcggtt
gtgcatagagaaaactctatgtcattcaagacaatggatgatggccaagttcttctttat
gctaattcagtgaatgctaagtaccagaccatcccttatccatggttggtctttggtgag
aaggtgaaggtaaatgctgtcttcatccgcgactcaaccggagtatctgattccatcctg
atcttatttggtggtgctgttactaaaggaagcatggctgggcacctgaagatgctcgat
ggttacattgatttatttatggatcctagactgtctgaatgctacttgcaacttaaagaa
gagcttgataaacttgtgcagaagaagcttgaagaccctagctttgacatccacaaggaa
ggaaagtacatcttatatgccgcgcaagagcttgctgcaggcgacctatgcgaaggaaga
ttcgtgtttggccgcgagacaagcagagcaaggctcagcagcaacggcgacaccaaaagc
aacattgagaaggatggaatgaacccgaagagcttgctccagaccttgctgatgagggcc
ggccacacccctccaaagtacaagaccaagcacctcaagaccaacgatttcagggccata
gtggagttcaaagggatgcagtttgccgggaaacccaagaggaacaagcaactagcggag
agggacgctgccattgaagcgctggggtggctcacacagacctccggtacaaagcttcag
gatgatggtgacgattcccctcttgacctaactgataatatgttgaagctgcttaataga
cccaggcgccggtcgaaaaacaattcaaggaggtga
DBGET
integrated database retrieval system
