Oryza brachyantha (malo sina): 102714667
Help
Entry
102714667 CDS
T02995
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
obr
Oryza brachyantha (malo sina)
Pathway
obr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102714667
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
obr03021
]
102714667
03019 Messenger RNA biogenesis [BR:
obr03019
]
102714667
Transcription machinery [BR:
obr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
102714667
Messenger RNA biogenesis [BR:
obr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
102714667
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf-C2H2_2
Motif
Other DBs
NCBI-GeneID:
102714667
NCBI-ProteinID:
XP_015695514
LinkDB
All DBs
Position
8:complement(3314576..3324244)
Genome browser
AA seq
955 aa
AA seq
DB search
MAAAAAAGAAAAAGVGHVVERFRARLREEGEEEEAGGGAAAVVRVYVEVLSELTFNCKPI
ITELTIIAGQHAALAARGIAEAICARICEVSADQKLPSLYLLDSIVKNIGREYVGHFAAR
LQKVFCDAYRKVHRNQHAAMRHLFGTWSQVFPSSVLRGIEDELQFSPLENKRPAAVSDIR
QSESISPRPSHGIHVNPKYLEAQQQFKHTTSVHQPITRGNRQMTDLEEDQINGLTSKSSR
GWPATNLKLQKSAMPYADGLDQQETFHSHTGGPLPNSRRTMSRSPPLDVLPRNASPKRAL
ERPPLSHSVLGPDPRRLPDRNGWFDRKWAFEDGAPRPPMSILDEEYRKQSARELIDAYGN
SQGKDVDERLSKMQRLDSNGMASRSTAQKWLASEEEEYTWEDMSPTLADRNRTSVPSLPL
PGSVRAGFPGPNSVLLESDIMRHSWPAQAPRPAIDGSALNLEDRIPANGPVDRAANRRYP
GNFGVQNGAFLEYQSSEHTLDPGRTAMPAPPWQQTIGQPLRVQAPQPASILNRMPLPTDS
EVPVKRLATGGTYDALNVDIPLLEKHRSSPAHAPMEWPLHTQSLTIQPTPSDTRHPRGAA
DSLDSRPYISQGANSSVFVPQHQYDALDRRTINTDDLAQPSYQHPDLLPLNQQNQGTILG
NQAQPHHPPQFLPHPHSHLQETVRSFAPSMSVAPQNIFQGQGGSAAVPPVPLLPSSFPVP
PAVAPYGLPSMPGFPLPSLPSGPPPPSQIGPSSSQVGGPPFVSGLLSNLMQQGVISLQPP
SQPQDSVGVDFNVDLKVRNEFVINALYQDLPRQCKTCGLRFKCQEEHRAHMDWHVTKNRN
SKNRKQTSRKYFVTVGEWLRAAETVGNDGVPSFEPAEPVADTKEEKELAVPADEDQTACA
LCQEPFEDFYSDETEEWMYKGAVYMNAPDGNVYALDRSQLGPIVHAKCLSGPNNT
NT seq
2868 nt
NT seq
+upstream
nt +downstream
nt
atggctgctgcggcggctgcgggggcggcggctgcggctggggtggggcacgtggtggag
cggttccgggcgcggctgcgggaggagggggaggaggaggaggcgggcggaggggcggcg
gcggtggtgcgggtctacgtggaggtgctctcggagctcaccttcaactgcaagcccatc
atcaccgagctcaccatcatcgccgggcagcacgccgcgctcgccgcgagggggatcgcc
gaggccatctgcgcgcgcatctgcgaggtgtctgctgaccagaaattaccatcattgtat
ctgctagacagtattgtgaagaacataggacgagaatatgtagggcattttgccgctagg
ttgcagaaggttttttgtgatgcctacaggaaagttcaccgcaatcagcatgctgcaatg
cggcacctctttggtacctggtcacaagttttcccttcttctgtgctacgaggaattgag
gatgagcttcaattttctcccttagaaaataaacgccctgctgcagtatcagatatccga
cagtcagagtcgatatctcctagaccgtctcatggcattcatgtaaatccaaagtattta
gaagcacaacaacaattcaagcacacaacgtcggtgcatcagccaataacccgaggcaat
cggcaaatgactgatctggaggaggatcagataaatgggttaacatctaaaagctcacga
ggatggccggcaactaatttaaagctccagaaatctgccatgccgtatgctgatggtctt
gatcaacaagagacatttcattcgcatactggaggaccattgcccaattcaagaagaacc
atgtcaagatcaccacctcttgatgtgctccctagaaatgcatcccccaagagagcattg
gagaggccgccactatcccattctgttctaggacctgaccctagaaggttgcccgatcga
aacggttggtttgatcggaagtgggcttttgaggatggtgcaccacggcctccaatgagc
atacttgatgaagaatataggaaacaaagtgcaagggaacttattgatgcttatggaaat
tctcaaggaaaagatgttgatgaaaggctttccaagatgcaacgtctagattcaaatggc
atggcaagcagatctactgcacaaaaatggcttgcttcagaggaagaagagtatacttgg
gaggatatgagtcctactttagctgatcgaaacaggaccagcgtgccttctttacctctt
cctggatctgtgagagctggatttcctgggccaaacagcgtactactggagtctgatatt
atgaggcacagttggccagcccaagctcctcgaccagcaattgatggctcagcactaaat
ctcgaagataggattcctgctaatgggcctgttgacagagccgccaataggagatatcca
ggcaattttggtgttcagaatggagcctttttagaataccagagttctgaacatactctt
gatcctgggagaactgccatgccagctccaccttggcagcagactattggtcagcccttg
cgggtacaagcaccccaacctgcatcaattctgaatagaatgccgctgcctactgatagt
gaagtgccagtcaagaggttggccactggtggtacatatgatgcactgaatgtagacatt
cctttgttggagaagcacaggtcctcacctgctcatgctccaatggaatggcctcttcat
acacagtcactaactatacaaccaactccatctgataccagacatcctagaggtgcagca
gatagtctagattctaggccatatattagtcaaggagccaattcatctgtttttgttcca
cagcatcaatatgatgccttggatcggagaacaataaacactgatgatttagctcaacca
tcatatcagcatcctgatttgttgccattgaatcaacaaaatcagggcacaattttggga
aaccaagctcaacctcaccacccgccgcaatttcttccccatcctcattctcaccttcag
gagacagttagaagctttgcacccagtatgtctgttgctccacaaaatatattccaagga
caaggaggtagtgcagctgttcctccagttccactcctgccaagttcttttcctgtacca
cctgcagtggcaccatatggcttgccatctatgcctggatttcctctgccatcattacct
tcagggccacctcctccatctcagataggtccatcatcatcccaagttgggggccctcca
tttgtctctggattgttaagtaaccttatgcagcagggtgtaatttcactgcagccaccc
agccaacctcaggattctgttggcgttgacttcaatgttgacctcaaggtacggaatgag
tttgttattaatgctctatatcaggatcttccaaggcaatgcaaaacttgtggccttcgt
tttaaatgccaagaagagcatcgtgctcacatggattggcatgttacgaaaaacagaaat
tcaaaaaatcgtaagcaaacttcacgtaaatattttgtcactgtgggtgaatggttgaga
gcagcagaaacagtaggaaacgatggcgttccttcttttgagcctgccgaaccagttgca
gacacgaaggaagagaaagaattggctgttcctgcagatgaggaccaaactgcatgtgct
ttatgtcaggaaccatttgaagatttctatagtgatgaaactgaagagtggatgtacaaa
ggtgcagtttatatgaatgcaccagatggcaatgtttatgctctagacaggtcgcagtta
ggacctattgtccatgctaaatgtctgtctgggccaaacaatacttag
DBGET
integrated database retrieval system
