Oryza brachyantha (malo sina): 102714786
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Entry
102714786 CDS
T02995
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 52C
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
obr
Oryza brachyantha (malo sina)
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obr03019
]
102714786
03041 Spliceosome [BR:
obr03041
]
102714786
03036 Chromosome and associated proteins [BR:
obr03036
]
102714786
Enzymes [BR:
obr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102714786
Messenger RNA biogenesis [BR:
obr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
102714786
mRNA cycle factors
Common to processing body (P body) and stress granule
102714786
Spliceosome [BR:
obr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
102714786
Chromosome and associated proteins [BR:
obr03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
102714786
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Cas3-like_C_2
ResIII
Motif
Other DBs
NCBI-GeneID:
102714786
NCBI-ProteinID:
XP_006663583
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All DBs
Position
11:14946009..14950664
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AA seq
623 aa
AA seq
DB search
MAAPSPRTSWADVADADPPAPAPAPAPAPAPASSNGPARSSYVPPHLRNRGASSGGGGGG
AAPPPPSSSAPGLLGRPGGGGMGRMGGGGGGGGGGVGFGAPRRWDREPNPFGNEDAAAGD
ETEVFDAHQNTGINFDAYEDIPVETSGQNVPPPVGTFAEIDLGQALNDNIRRCKYVRPTP
VQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRGPPAQRPQRGGMRTACPLALI
LSPTRELSMQIHDEAKKFSYQTGVRVVVAYGGAPITQQLRDLERGVDILVATPGRLVDLL
ERARVSLQSIRYLALDEADRMLDMGFEPQVRRIVEQMDMPPPGVRQTMLFSATFPKEIQR
MASDFLENYIFLAVGRVGSSTDLIVQRVEFVQEADKRSHLMDLLHAQRDTATPGKPTLTL
VFVETKRGADSLEHWLCMNGFPATSIHGDRNQQEREYALRSFKSGQTPILVATDVAARGL
DIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNSSMARSLAELMQESNQ
EVPAWLSRYAARPSYGGGGRNRRGGGGSRFGGRDFRRDSSSGRGGDYYGGGGSGGAGGYG
GSSAYGGGGYGGGAGAGAPSAWD
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atggcggccccctccccacgcacctcctgggccgacgtcgccgacgccgacccgcccgcc
cccgcccccgctcccgcccccgctccggcccccgcgtcgtccaacggccccgcgcggagc
tcgtacgtgccccctcacctccggaaccggggggcttcgtcggggggtggtggtggtggc
gcggcgcccccgccgccgtcctcctccgcgcccgggctcctcggccgccccggtggcggt
ggtatggggaggatgggcggcggcggcggcggcggcggtggtggtgttggtttcggtgcg
ccgcggaggtgggaccgggagccgaacccgttcgggaacgaggacgcggcggcgggggac
gagaccgaggtgttcgacgcgcaccagaacaccgggattaacttcgacgcgtacgaggac
atccccgtcgagaccagcggccagaacgtgccgccgccggtgggtacgttcgcggagatc
gaccttggacaggcgctcaacgacaacatccggcggtgcaagtatgtgcgccccaccccc
gtgcagcggtacgccatcccgatctcgcttgcgggcagggacctcatggcctgcgcgcag
accgggtccgggaagacggccgccttctgcttccccatcatcagcggcatcatgcgcggc
ccgcccgcccagaggcctcagcgcggtgggatgaggaccgcctgccctctcgcgctcatc
ctctccccgaccagggagctctccatgcagattcacgacgaggcgaaaaaattttcttat
cagactggtgtcagggtggttgtcgcatatggaggagcacctattactcagcagttgaga
gatcttgagaggggtgttgacattcttgtcgctactcctggtcgattggttgatttattg
gaaagggcaagagtatctttgcaatctatcagatatcttgcccttgatgaggctgataga
atgcttgacatgggttttgaaccacaagttaggagaattgttgagcaaatggacatgcct
ccgccaggtgtcaggcagacaatgttgtttagcgccacattcccaaaagaaatccagaga
atggcatctgacttcctggagaactacatattcctggctgttggaagagttggttcaagt
acagatctgatcgtacaaagagttgagtttgtacaggaagcagacaaaagaagccacttg
atggatctgcttcatgcacaaagagacactgctactccaggaaagccaacacttacactt
gtcttcgtggaaaccaaaaggggtgctgattcattggagcactggttgtgtatgaatgga
tttccagctacttctattcatggtgatagaaaccagcaggaaagagagtatgctttgaga
tccttcaagagtggacaaactcctattctagttgcaactgatgtggcagcccggggcctc
gacattcctcatgttgctcatgttgtaaactttgatcttcccaatgatattgatgactac
gtacacaggattgggaggacagggagggcaggaaaaagtggtcttgcaactgcctttttc
aatgagaataactcttccatggcgaggtctttggctgagctaatgcaagaatctaatcag
gaggtacctgcatggttgtctcgctatgcagctcgtccatcttatggtggtggtgggagg
aacagaaggggtggtggtgggagtcgctttggtggccgtgacttccgcagggattcttcc
tcaggaagaggtggtgactactatggtggaggcggcagcggtggagctggtggttatggg
ggttcctctgcatatgggggtggtggctatggtggtggtgctggcgctggggctccaagt
gcctgggattaa
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