Oryza brachyantha (malo sina): 102714969
Help
Entry
102714969 CDS
T02995
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
obr
Oryza brachyantha (malo sina)
Pathway
obr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102714969
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obr03019
]
102714969
03041 Spliceosome [BR:
obr03041
]
102714969
03009 Ribosome biogenesis [BR:
obr03009
]
102714969
03016 Transfer RNA biogenesis [BR:
obr03016
]
102714969
Enzymes [BR:
obr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
102714969
Messenger RNA biogenesis [BR:
obr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
102714969
Spliceosome [BR:
obr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
102714969
Complex C
U4/U6.U5 tri-SnRNP related factors
102714969
Ribosome biogenesis [BR:
obr03009
]
Eukaryotic type
Pre-60S particles
Helicases
102714969
Transfer RNA biogenesis [BR:
obr03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
102714969
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
Motif
Other DBs
NCBI-GeneID:
102714969
NCBI-ProteinID:
XP_040385380
LinkDB
All DBs
Position
12:6086857..6094088
Genome browser
AA seq
1008 aa
AA seq
DB search
MATLKRKSQKDDPAAELASPPTKTPRSEASESPAPSPAPSPAGGAEPVACVHDVSYPEGY
DPSAPATHLLNGGGAPSSEAAGPAKTFPFQLDPFQAEAIRCLDSGESVMVSAHTSAGKTV
VALYAIAMSLCNQQRVIYTSPIKALSNQKYREFKEEFSDVGLMTGDVTIEPNASCLVMTT
EIWRSMQYKGSEVMREVAWIIFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNA
KEFADWVAKVHKQPCHIVYTDYRPTPLQHYVFPSGGDGLYLVVDEKSKFREDSFQKALNA
LVPASENDKKRENGKWQKGLLTGKPSEESDIFKMVKMIIQRQYDPVILFSFSKRECEFLA
MQMAKMDLNDDDEKANIETIFWSAMDLLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPIL
KEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDRFRWLSSGEYIQMSGR
AGRRGIDQRGICILMVDEKMEPSTAKMMLKGSADSLNSAFHLSYNMLLNQIRSEDGDPEK
LLRYSFYQFQADRALPDLEKQVKELELERNSMVIEEEENLKSYYDLLQQYKNLKKDVRDI
VHSPKYVLPFLQPGRLARIQYSTDEQTTFSIDENVTWGVTINFEKVKTHGEDRRPEDSDY
TVDVLTRCSVTKDKSGKKTMKIIPLKERGEPVVISLPLSQIDGLSSIRMHIPKDLLPVEA
RENTLRKVEEVISRFAKDGIPLLDPEEDMKVQSSSFRKATRRIEALESLFEKHDVHNSPH
IKQKLKVLHAKQELSAKIKSMKKTMRSCTALAFKDELKARKRVLRRLGYITSEDVVEVKG
KVACEISTADELTLTELMFSGTLKDATVEQMVALLSCFVWQEKLQDAPKPREELDLLFYQ
LQETARRVANLQLECKIQIDVESFVNSFRPDIMEAVYSWARGSKFYQIMEMTQVFEGSLI
RAIRRLEEVLQQLILASKSIGETQLEAKLEEAVSKIKRDIVFAASLYL
NT seq
3027 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccctcaagcgcaagtcccagaaagacgatcccgccgccgagctcgcgtcccct
cctaccaagaccccgcgctcggaagcctccgaatcacccgctccctcccccgccccctcc
cccgccgggggcgccgagcccgtcgcctgcgtgcacgacgtctcctaccccgaaggctac
gacccgtcggcccccgccacccacctgctcaatggcggcggcgccccctcctccgaggct
gccgggccagccaagaccttcccgttccagctcgaccccttccaggccgaggccatccgg
tgcctcgacagcggcgagtccgtcatggtttcagctcacacatcagctggaaagacggtg
gttgcattatatgcaatagcaatgtctttgtgtaatcaacaacgggtcatctacacatct
ccaatcaaggctttgagcaaccaaaagtacagagaattcaaagaagagttctctgatgtt
ggcctcatgactggggatgttactattgaaccaaatgcatcttgtttggtcatgaccaca
gaaatttggcgcagtatgcagtataaaggatcagaagtcatgagggaagtagcttggatt
atattcgatgaagtgcactacatgcgggatagagagagaggagtggtgtgggaggagagt
atagtaatggctcccaagaactcacggtttgtgttcctctcagctaccgtgccaaatgcc
aaggagtttgctgactgggtggctaaggtacataaacaaccttgtcatatagtctatact
gactaccggcctacacctctccaacactatgtatttccttctggaggtgatggtttatat
ctggtagttgatgaaaagagcaagttcagagaggacagttttcagaaagctttgaatgct
cttgtccctgctagtgaaaatgataaaaagagggaaaatggtaagtggcagaaaggtctc
ttgacaggaaaacctagtgaggaaagcgacatattcaagatggtgaagatgataattcag
cgccaatatgatccagtgatacttttcagctttagcaaaagggagtgtgaatttcttgct
atgcagatggctaagatggacttgaatgatgatgatgagaaggcaaacattgaaaccatt
ttttggagtgctatggatttgctttcagatgatgataaaaagcttcctcaggtttcaaat
atgcttcccttattgaaacgtggcattggtgtacaccattctggtcttttgcccattttg
aaggaagtaattgagatactcttccaagagggtcttatcaagtgtctgtttgcaacagaa
acattcagtattggtttgaatatgcctgcaaagactgttgtgtttaccaatgtgcgaaag
tttgacggtgatcgattcagatggctgtcaagtggagaatacatccagatgagtggccgt
gctggtcgccgaggtattgatcagcgtggtatctgtatattgatggtagatgagaaaatg
gaaccttcaactgccaaaatgatgctgaaaggaagtgctgatagtttgaacagtgccttt
catttaagctacaatatgttgttaaatcaaatacgaagtgaggatggtgatccagaaaag
cttcttcggtactcattttatcaatttcaagctgatcgagctctccctgatcttgagaag
caagtcaaggagctggaattagagagaaattccatggttattgaggaggaggagaacctg
aagagttattatgatctcttgcagcagtataaaaatttaaagaaggatgtccgtgatata
gtacattctccaaaatatgttctacctttcttgcaacctggaaggcttgctcgcattcag
tacagtaccgatgagcaaaccacattctctattgatgaaaatgtcacttggggtgttaca
ataaactttgaaaaggtgaaaacccatggtgaagataggaggcctgaggattctgattac
acagttgatgttctcacaagatgttcagtaactaaggacaaaagtggaaagaagacaatg
aagattattcctttgaaagaacgtggagaaccagttgtgatttccttgccactttctcag
attgatggactaagcagcattcggatgcacataccaaaggatcttttgcctgtagaagct
cgagaaaacaccttgaggaaagttgaagaagttatttctaggtttgctaaagatgggatc
cctttattggatccagaagaggatatgaaagtacaatcaagttctttccggaaagctacc
agaagaatagaagcccttgaaagtttatttgaaaagcatgatgtccacaattctccacat
attaaacaaaagctaaaagtcttgcatgctaagcaagaattatcagccaaaataaagtct
atgaaaaaaacaatgcggtcctgcactgccctagccttcaaggatgagctcaaggcccga
aaacgggttcttcgtaggctaggttatattacaagtgaggatgttgtggaagtgaagggc
aaagtagcatgtgagataagcacagctgatgaactaacattgacagagctcatgttcagc
ggcactttgaaggatgctaccgtagaacagatggtggcactactttcttgctttgtttgg
caggaaaagcttcaggatgccccaaagccaagggaggagctcgacttgctgttctaccag
ttgcaggagacagctagaagggttgccaaccttcagcttgaatgcaagatccaaatcgac
gtggagagttttgtgaactctttccggcctgatataatggaggctgtgtattcatgggct
agagggtccaaattctatcaaatcatggagatgacccaagtgtttgagggcagcttgatc
agagccatcaggaggctcgaggaggttctgcaacagctcattctggcatcgaagtccatc
ggcgaaacccagttagaagcaaaactcgaggaggctgtcagcaagatcaagagggatatc
gtgtttgcagcatctttatacctgtaa
DBGET
integrated database retrieval system
