Oryza brachyantha (malo sina): 102715112
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Entry
102715112 CDS
T02995
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 4
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
obr
Oryza brachyantha (malo sina)
Pathway
obr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102715112
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obr03019
]
102715112
Enzymes [BR:
obr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
102715112
Messenger RNA biogenesis [BR:
obr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102715112
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
102715112
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Motif
Other DBs
NCBI-GeneID:
102715112
NCBI-ProteinID:
XP_015693278
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All DBs
Position
5:complement(11949462..11953815)
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AA seq
394 aa
AA seq
DB search
MLKLQTARAASLPLFRLRPSSPIPGGCRRRLPFVPICKRRMGTQAQPSFAPLPTARPESD
AGAAGYQFRLVSYNILAQVYVKSAFFPHSPSACLKWKARSKAVLSELKSFEADLMCIQEL
DEYETFYRKNMENSGYSSIYIQRSGDKRDGCGIFYKPKSMELVQKEAIHYNDLVEKYVHT
DHVNTVTSNNSSPTEEASKKTDNNKHGDPNDPRFRLKRDCVGLLAAFKLNDPCDHILIMA
NTHIYWDPEWIDVKLAQAKYLLSRVSQFEKLISNKFDCKPSVIIAGDFNSTPGDMVYNYL
VTANSESTDEAPAIKLRSLYAANGGEPEFTNCTPGFTGTLDYIFLSDGSSIKPTSLLRIP
QGDSADVQGGLPNFHHPSDHLPIGADFQVLSNEG
NT seq
1185 nt
NT seq
+upstream
nt +downstream
nt
atgctaaagctccagacagcccgggcggcgtctctccctctcttccgcctccgtcccagc
tcccctattcccggcggctgccgccgccgcctccccttcgtcccgatttgcaaacggcgg
atgggcacccaggcgcagcccagcttcgcccctctccccacggcgcgacccgaatcggat
gcaggggcagcagggtaccagttccggctggtttcctacaatatcttggcccaggtttat
gtgaagagtgcatttttcccgcattccccatctgcctgtctcaagtggaaagctcggtct
aaagctgttctatcagaactcaagagcttcgaagctgacctcatgtgcatacaggagttg
gatgagtatgaaactttctacaggaaaaacatggagaattctggatattcaagtatttac
attcaacgatctggggacaaacgggatggatgtgggatattctataaaccaaaaagcatg
gaactagtccagaaggaagcaatccattacaacgatttagtggaaaaatatgttcatact
gatcatgtaaatactgttacatcaaataattcttcaccaacggaagaagcaagcaagaag
acggataataacaagcatggagatccaaatgatccacgtttcagattgaagcgtgactgt
gttggtttacttgctgctttcaagcttaacgacccttgtgatcacattttaattatggcg
aacactcatatatattgggatcctgaatggatcgatgtaaaattggctcaagcaaagtat
cttctttcaagagtttctcagtttgagaaacttatctcgaataaatttgactgtaaacct
tcagtaataattgctggtgacttcaactcaactcccggtgacatggtatacaactacctc
gtaacagctaactctgaatctacggacgaagccccggcgatcaaattacgcagcctttat
gctgcgaatggaggggagccagagttcaccaactgcactcctggttttacaggaacactg
gattacatatttttgtcggacggcagttcaataaaacctaccagcctacttcgtatacca
caaggggattcagccgatgtccagggagggctacccaattttcaccatcctagtgaccat
ctgccaatcggtgctgatttccaggtacttagcaacgaaggctga
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