Oryza brachyantha (malo sina): 102715641
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Entry
102715641 CDS
T02995
Name
(RefSeq) uncharacterized protein LOC102715641
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
obr
Oryza brachyantha (malo sina)
Pathway
obr04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
102715641
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
obr04131
]
102715641
Membrane trafficking [BR:
obr04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
102715641
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps8
Beta-prop_VPS8
VPS8_N
TPR_VPS8_2
WDR55
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_1st
WD40_CDC20-Fz
Beta-prop_WDR5
ANAPC4_WD40
Beta-prop_EML
Clathrin
TPR_Vps41
WD40_WDHD1_1st
Beta-prop_WDR3_1st
Beta-prop_HPS5
Beta-prop_TEP1_2nd
WD40
Beta-prop_THOC3
WD40_Prp19
WD40_Gbeta
zf_RING_Vps8
zf-RING_Vps41
Beta-prop_RIG_2nd
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
102715641
NCBI-ProteinID:
XP_015689236
LinkDB
All DBs
Position
2:930728..943066
Genome browser
AA seq
1923 aa
AA seq
DB search
MSTSSPATPPSQPPPQPPQELDLDAFLPSSPASSAASESDGDGDDHRRAVDDLLLLLSSS
DSDTDEPPARPITSSTQLKTLASIRAPAPPPKPSLSPSPSASPRRSTSASPSATLTSLVS
RTFSNNAASSSSSKPLPSLFRGVRPSPKPGAALAAAAAASRAVLTPHAAAIKSRRSASAP
IERLLDEGSGSGSEASEELPSSGNSEAGVAEKANADVTEEAASGIGDEELEAEKHGEEVR
FEEKSEPIESVEEVAAASAVGENISEHEQLGASSAQTDQPVDQIGLADEECVNDQIADEN
FTEFGGAGDQAGAICKKNVDDDLEFERSETSVEEQLESESIIDKVIEERLEISRKAEQTA
EKKPKVSMKPLEQAEELEKRQASFGQHWEEGAAAQPMHLEGIGRGQPAIGYMQIEVDNPI
TRAMSSSSFGQDHGSPQVLTVHKSYIALGMSKGSVIVIPSKYSIHQADDTDAKMLFFWNQ
GEKTQSPVTAMCFNQQGDLLLVGYGDGHMTIWDVQKGTAAKVIYGEHTAPVVHACFIRQS
KAITGDSKGLVLLHTFSIIPVINRLTIKGTQRLFDGNTGIVLSACPLLVDESFGSSNSST
QGNLTTSSGGLSSMMGGVVGGVVGVDSGWKFFNEGSSPVEDGVVVMFIMHQHALVVRLRT
NIDHVDHIETFSRPDGAREGSIAYAAWKYTTFSSDSLSIDDEQVSWLALAWDRQVQVAKY
IKSKMIKHKEWKIDSAAIGVAWLDDQMLVVLNLRGQLCLFSKDGNELRRTVFVLDGFVFD
DSILYHTHFSNRFGNPERHFNNSVAVRGATVYILGPNFLTVSRLLPWKERIEALKRAGDW
MGALDMAMKLYDGQTQGVVDLPRTVDSIREAIMPYLVELLLSYIHYVFEYISIALSSHSG
KGGASDGLVDADRSLLTQREEQYARVGGVAVEYCVHIGRNDILFDTVFSKFVAAKSGGMF
LEVLEPYILKDMLGSLPPEIMQALVEHYSSKGWLQRVEQCILHMDISSLDFNQVVRLCRE
HGLYGALIYLFNQGLKDFRTPLEELLSVIQNTSRKEGASTCYRMLVYLKYCFQGLAFPPG
HGMIPQSRLHAVREELLQFLLEESKTFSTEVYKGFQSSCGKCPNICYLLWMDTEAALEVL
KCAFAHERFETRDNPSSTPDARVSEDGNNSNIGSPENENIMLQNVVDTIVDIVGLENEAI
HSVSGSVESEIWPSEDFGHLIEFVSSFVSHKRAKASQRVVRHILRYLTSSTILSSDDKKT
STHQKEKEVLQLFDAVPQIDWNSDYVLHICLDAHFHQACGLIYMTRKQNLAALESYMKDT
LEPFHAFIFINKKLSELADDEASSFRSSVISHFPELVKLSRECAFVLVNDHFHDEIQQIL
SKLHSDHHSLFLFLKTAIEVHLSGKLNFSELSTRNNSTVELQYSSRELEFYIQRLLNLPK
LLDRNPVIVTDELVELYLELLCQYERRSVLKFLETFDSYKLERCLHLCLDYGVTDAAAFL
QERVGDVGSALVLILAGLDEKISLFISSVENAFSWIASKSISEIEQPDVVLKLSEAHPVL
DALRAAIGLCQRNSQRLNPEESQSLWFQLLDSFSEPLKKLYGSKDVHEKGVRPNGSETLN
RQPKDKGFSQKTRISVYQRCLNALRRVFSQFVGEIIEAMAGHIPLPAIMGKLLSDNGSQE
FGDFKLVIHRMLSMYLYEKRILETAKSVIEDDSFYTLSLLKRGVCHGFAPQTFVCCICNC
SLSKESAISAIRVFSCGHATHIQCESEQSKSSNRDSKNGCPICLSTSNTQALNKSPIYEN
GLGKHFGSESEVLHGTYHTHETDHVERSRGLQQMSRYEILNHLQRPQNSLHVETVSPLKL
SPPAIYHEKIQKRTTTVGESSKHPVRTEKPQIIWQMKNPISRKSGNRLLPKSSILSSQNN
QLR
NT seq
5772 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacgtcgtcaccggcgacgccgccgtcccagccgccgccgcagccgccgcaggag
ctcgacctagacgccttcctcccctcgtcccccgcctcctccgcagcctcggaatctgat
ggagacggagacgatcaccggcgcgccgtcgacgacctcctcctcctcctctcgtcgtcc
gactccgacaccgacgagccacccgctagaccaatcaccagcagcacccagctcaaaacc
ctagccagcatccgagccccggctccgccccctaaaccttcgctctcgccttccccatcc
gcctcacctaggagatccacatccgcctcgccgtcggcgacactgacctccctcgtgtcg
agaaccttctcgaacaacgccgcttcgtcttcctcgtcgaagccactcccttcgctcttc
cggggcgtccgtcccagccccaagcctggcgccgctctcgccgcagctgccgccgcgtcc
cgcgccgtcctcaccccccatgcggctgccattaagtcccggcgttccgcctctgcgccc
atcgagaggcttctagacgaaggctccggctccggctccgaagcctccgaggagctccct
tcctctggaaattcggaggcgggagtagcggagaaggctaatgcggatgtgaccgaggaa
gctgccagtgggattggtgatgaagaattggaagcggagaagcatggagaagaagtgcgg
ttcgaggagaaatctgagcccattgagtcggtggaagaagttgctgcggcttctgctgtt
ggtgagaatatcagcgagcatgagcaacttggagcaagttcggcacaaactgatcaacct
gtggatcaaattggtctcgctgatgaggaatgtgtcaatgaccaaattgctgatgaaaat
ttcacagaatttggtggtgctggggatcaagctggggctatctgcaagaaaaatgttgat
gatgatctggaatttgaaagatccgaaacgtccgtggaagagcaattggaatctgagagc
attattgataaggtaattgaagagaggttggagattagcaggaaagctgagcagacagcg
gagaaaaagcctaaggtgtcgatgaaaccattggagcaggcggaggagcttgagaagagg
caggcttcttttgggcagcactgggaggaaggagcagcagcacaacccatgcatctggag
gggattggaaggggccaaccagctattggttacatgcagattgaggttgacaaccctata
actcgtgccatgtcctcctcgtcatttgggcaggaccatggttctccccaggtgctgaca
gttcataagagctatatagcgctgggcatgtctaaaggatctgtcattgttataccaagc
aaatattccatccaccaagctgatgatacagatgcaaagatgctgttcttttggaaccaa
ggtgagaaaactcaatcaccggtgactgccatgtgcttcaaccagcaaggcgatcttctt
ctagtaggatatggtgatggtcatatgacaatctgggatgtacagaaaggtacagctgca
aaagtcatatatggtgagcacacggcacctgtagtgcatgcttgctttatccgccaatct
aaagccattactggtgattcaaaagggctagtgctgttgcacacattttccattatccca
gtaattaatcgcttgaccattaagggaacccagcgcctttttgatggaaataccggaatt
gtgctctcagcctgtcctcttctagtggatgaatcatttggttctagcaactcatccacc
cagggaaacctgacaacttcttccggtggtcttagcagcatgatgggaggtgttgttgga
ggtgtagttggagttgattctggatggaagtttttcaatgaaggttcttctccagtggag
gatggtgtagtggtgatgtttattatgcaccaacatgctcttgtggttaggctccgtacc
aatattgatcatgttgaccatattgaaaccttctctagaccagatggagcacgagagggc
tctattgcatatgctgcatggaaatacactacattctcgagtgattcactgtccatagat
gacgaacaagtatcatggcttgcacttgcatgggatcgtcaagttcaagtggcaaagtat
attaaatcaaagatgattaaacataaagaatggaagattgacagtgcagcgattggtgtt
gcctggttagatgatcagatgttggttgtccttaatttgagagggcagctctgtttgttt
tccaaagatggcaatgaacttcgcaggactgtatttgttcttgatggttttgtcttcgat
gacagcatactataccatacacatttctctaacaggtttggtaacccagagaggcatttt
aacaattcagtagcagtaagaggtgctacagtgtatattcttgggccaaatttcctcaca
gtttcccgacttcttccatggaaagagaggattgaagcactaaagagagctggcgattgg
atgggtgcactggacatggcaatgaaactttatgatggccagacccagggtgtcgttgat
ctcccgagaacagttgattctatacgagaagccataatgccatatttagtagagttgctg
ctatcatatatacattatgtatttgaatacatttcaattgctttgtcaagccatagtgga
aaagggggtgcatcagatggcctggtagatgccgatagatccctgctgacacagagagag
gaacagtatgcacgtgtaggaggggttgcagttgagtattgtgttcatattggacgaaat
gacatcctttttgacacagtcttttctaagtttgttgctgcaaaaagtggaggtatgttt
ctggaggtgctagagccctatatattgaaggatatgcttggctctttgccgcctgagatt
atgcaagcactcgtagagcattatagtagcaaagggtggttgcaacgagttgaacaatgc
attcttcatatggatatttcttcattggattttaatcaggtagtcagactatgtcgtgaa
cacggattatatggtgcattaatttatttgtttaaccaaggtcttaaagatttccgcacg
cctctagaggagcttttatctgtcattcagaacactagtagaaaagaaggtgcttctact
tgctacaggatgcttgtttacctgaagtattgctttcagggcctagcatttcctccaggg
catgggatgattccccaatcccgccttcatgcagtacgagaagaacttttgcaatttttg
cttgaggagtcgaagactttcagtactgaagtatacaagggcttccaatcctcatgcgga
aaatgcccaaacatatgctatctactatggatggatactgaagctgctttggaggttctc
aaatgtgcctttgcacatgaaagatttgaaactagagataacccatctagtactcctgat
gcacgtgtctcagaggatggaaacaatagtaatattggaagtcctgagaatgaaaatatt
atgttacagaatgtagtggacaccattgtggatattgttggtttggaaaatgaggctatt
cactcagtttctggatctgttgagtcagaaatttggccttcagaagactttggtcatctt
atcgagtttgtgtcttcttttgtttcccacaaaagggcaaaagcatctcaaagagttgtt
aggcacattctcagatatcttacttcatccactatcctctcatctgatgacaagaaaaca
tcaactcatcagaaagaaaaggaagttcttcagctcttcgatgcagttcctcaaattgat
tggaattccgattatgtgttgcatatttgcttagacgctcactttcaccaggcctgtgga
ttgatatatatgaccagaaagcaaaatttggctgctttagaaagttacatgaaggataca
ctagaaccattccatgcttttatcttcattaacaaaaaactatccgaattggcagatgac
gaagcttcatcatttcgttcctcagtaatatctcattttcctgagcttgtcaagctaagc
agggagtgtgcatttgtcttagtcaatgatcacttccacgatgagatccagcaaatattg
tccaagcttcattctgatcaccacagcctctttctttttttgaaaactgcaattgaagtg
cacttgtcgggaaaactgaatttcagtgagcttagtaccagaaacaatagcacggtggaa
cttcaatactcatctcgtgaacttgaattttatatacaaagacttttaaatcttcccaag
ttgttggaccgcaatcctgttattgtgactgatgagttggttgaactctatctggagctc
ttgtgtcagtatgagcgaaggtcagttttgaagtttctggagacatttgacagttacaaa
ttggagcggtgtttgcatctttgtttagattatggagttacagatgctgctgcattcttg
caagagagagttggtgatgttgggagtgcactggtacttattctagcaggtcttgatgag
aaaatcagcctatttatatcttcagtggaaaatgctttctcttggattgcatcaaagagt
atatctgagatagagcaaccagacgttgttttaaaactgagtgaggctcatccagtgctt
gatgcattacgtgctgccatcggattgtgtcaaaggaattcacaacgcttaaacccagag
gagtcccagtcactttggttccaactgcttgactccttctcagagcccctgaaaaaattg
tacggaagcaaggatgtacatgaaaaaggtgtgaggcccaatgggagtgaaacgttgaat
agacagccaaaggacaaaggattctcacaaaaaacaaggatttcggtttaccaaaggtgc
ttgaatgcactgcggagagtattttcacagtttgttggagaaataattgaggcaatggct
ggacatatacccctaccagcaatcatgggaaagctattatctgacaatgggagtcaagag
tttggtgattttaagcttgttatacatagaatgctgtccatgtatctttacgaaaaaaga
atactggaaactgccaagtcagtaattgaggatgattcattctataccttgagcttacta
aagagaggggtttgtcatggatttgcgccgcagacttttgtatgttgcatatgcaactgc
tctctttcgaaagaaagtgctatttcagcgatacgagtattcagttgtggacatgcaact
catatccaatgtgagtccgaacaaagcaagtcatcgaacagggattccaaaaatggatgc
ccaatttgtctttcaactagtaatacacaagctttgaacaaatcacctatatatgagaat
gggctagggaaacattttgggtctgaaagcgaggtattgcatggcacctatcatacccat
gaaacagaccatgtcgagagatctcgtgggcttcagcagatgtcacggtatgaaatactg
aatcatcttcagaggccacagaactctttgcatgtagaaactgtatctccactgaaactt
tcaccaccagcaatatatcatgaaaagatacagaagagaacaaccacggtgggagaatcc
agcaagcatccagttagaactgaaaaaccccagataatatggcaaatgaagaatccaata
tcaagaaaatcagggaaccgacttctgccaaagtcaagcatattgagttctcagaataat
caattacgatag
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