Oryza brachyantha (malo sina): 102716014
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Entry
102716014 CDS
T02995
Name
(RefSeq) exosome complex component CSL4
KO
K07573
exosome complex component CSL4
Organism
obr
Oryza brachyantha (malo sina)
Pathway
obr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102716014
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obr03019
]
102716014
Messenger RNA biogenesis [BR:
obr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
102716014
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
102716014
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
MmeI_Mtase
Motif
Other DBs
NCBI-GeneID:
102716014
NCBI-ProteinID:
XP_006648103
UniProt:
J3LIB9
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All DBs
Position
2:complement(26611427..26613863)
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AA seq
217 aa
AA seq
DB search
MINGEAETLLSSSLASPPMAATAMEHDGGGEVVTPGELLGNSSSLLAGRGAYAEGRSVRG
SVTGHRRLVPPPPGSTDQRFTVEVVGHKAHGAVPQPGSVVIARVTKVMARMASADIMCVD
SKAVKEKFTGTIRQQDVRATEIDKVDMYQSYRPGDIVKALVLSLGDARAYYLSTAKNELG
VVSAQSITGGTLVPISWTEMQCELTGQIEQRKVAKVE
NT seq
654 nt
NT seq
+upstream
nt +downstream
nt
atgatcaacggtgaggccgaaaccctcctctcctcctccctcgcttctcctcccatggca
gctacggcgatggagcacgacggcggcggcgaggtcgtcacccctggggagctcctcggc
aactcctcgtccctcctagcggggcgcggcgcctacgccgaaggccgctccgtgcgcggg
tcggtcaccggccatcgccgcctcgtgccgccgcctcccggctccaccgaccagaggttc
actgtggaggtggtcgggcacaaggcccatggagctgtgccgcagcccggaagcgtcgtc
attgcccgtgtgacaaaagttatggctaggatggcctctgcagatataatgtgtgttgac
tcaaaggctgtcaaagaaaagttcactggcacgataaggcaacaagatgtccgtgcaact
gaaatcgacaaggtagatatgtatcagtcataccgacctggtgatattgtcaaagccctg
gttctttctcttggtgatgcaagggcatattacctttccactgccaagaatgaacttgga
gttgtttctgcacagagtataactggtggtacactggttccaatcagttggactgagatg
caatgcgaattgacaggccaaatagaacaaaggaaagttgcaaaagtggaatag
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