Oryza brachyantha (malo sina): 102716053
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Entry
102716053 CDS
T02995
Name
(RefSeq) probable ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
obr
Oryza brachyantha (malo sina)
Pathway
obr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102716053
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obr03019
]
102716053
03400 DNA repair and recombination proteins [BR:
obr03400
]
102716053
Enzymes [BR:
obr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
102716053
Messenger RNA biogenesis [BR:
obr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
102716053
DNA repair and recombination proteins [BR:
obr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
102716053
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RQC
HTH_40
HRDC
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-GeneID:
102716053
NCBI-ProteinID:
XP_006658140
UniProt:
J3MP69
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All DBs
Position
7:18795914..18804249
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AA seq
898 aa
AA seq
DB search
MEAALKTYFGFSGFRSCQREIVQKVLDGRDCLVVMATGSGKSICYQIPPLVTKKTAVVVS
PLLSLMQDQVMSLKQRGVKSEYLGSTQTDVSVSGEAEKGLFDVLYMTPEKAMSLPPRFWS
NLQAAGICLLAVDEAHCISEWGHDFRTEYKQLHMLRDLLVGVPFVALTATATQRVRGDIT
TSLTLRNPHIVVGSFDRPNLFYGVKSCNRSMSFIDELVQDVSKNCTAGGSTIIYCTTIRE
TEQVHEALVAAGIKSGIYHGRMGNIAREESHRSFVRDEVLVMVATIAFGMGIDKPDVRCV
IHYGCPKSLESYYQESGRCGRDGLPSVCWLYYQRSDFTKADFYCAEAKSQTQRKAIMESF
MAAQKYCLLTTCHRKFLLQYFGEERTTDCGNCDNCTRTKNERDLSKESFLLLSCIKSCGG
RWGLNLPIDVLRGSRGKKIVENNFDKLPLHGRGKDYPPNWWKALGSVLLEHDHLKETVRD
TYRFISVSPNGCKFLATADKVDGAPLFLQLSEEMIELEGHGSSQCKEGGLNPSGPSESER
LSEDELKIYQVLLNVRMQLAQDIGTAPYAICGDQTLRNFAKLRPSTVARLANIDGVNQHF
ISRYGGIFIQNITKLAKELNLPLDDSSAVESISAAPKPIQNNLPRNLGDAKFCSWELWQK
MKFSFQKIAYFRRAVPIKEKTVISYILDAAQDGCEMDWSRFCQEVGLTHEIASKIRLAIT
KVGSHERLKPIKEELPENVTYEVIKTFLVIEGLGLSEQVFGTVPTDGILSKTEESPKPTS
NGSEVGENDNQGHRVLELDACDSRSPLTKRGQTDGSLICGDEPASKLQKIDGQGVKSTAA
VGATEDAILELVAGGDGVSLEDVVKHFDGSKRECVVEMLDSLEGNFSVYKKNGCYLIL
NT seq
2697 nt
NT seq
+upstream
nt +downstream
nt
atggaggcggctctcaagacatatttcggcttctcggggttccgctcgtgccagcgggag
atcgtgcagaaggtcctggatggccgggattgcttggtcgtcatggccaccggcagcggc
aagtcgatttgctatcaaatcccaccactcgttacaaagaagacagctgttgttgtcagc
cctcttctgtcactgatgcaagaccaggtcatgagcttaaagcagcgtggtgtgaagtct
gaataccttggcagcacccaaacagacgtctctgttagtggtgaggctgaaaaaggcttg
ttcgatgttctgtacatgacaccagagaaagccatgtcacttcctccaaggttttggagt
aacttgcaggctgctggaatctgcctgttggctgttgatgaagcacactgcatatcagaa
tggggtcatgatttcagaacggagtacaaacagctgcatatgttgcgtgacctccttgtg
ggtgtaccctttgttgctttaactgcaacagccacacaaagggtacgtggagatattacc
acttccttgaccctgcgaaatcctcacatcgttgtaggatcatttgatcgtcctaacctt
ttctacggtgtgaaatcatgcaatcgatctatgtcctttatcgatgaacttgtgcaagat
gtctcaaagaactgtactgcgggtggctcaacaataatatactgtactaccatccgagag
accgaacaggtgcacgaggcattggttgctgctggaatcaagtctggcatttaccatggt
agaatgggaaatatagccagagaggaatcccatagatcgtttgttagagatgaagtactt
gtgatggtggctaccattgcttttggaatgggaatcgacaagccagatgttagatgcgta
atacattatggatgtccaaagagcctggaatcctactaccaggaaagtgggcgttgtgga
agagatggactgccttcagtgtgctggctatattaccaaagaagtgattttacaaaagct
gatttctattgtgctgaagctaaaagtcaaactcaacgaaaagccatcatggagtcattc
atggcagcacaaaagtattgccttcttactacatgtcacagaaaattcttgttgcagtac
tttggcgaagagcgcaccaccgactgtggtaattgtgacaactgcacaaggacaaaaaat
gagagggatttgtcaaaagaatccttcttgttgctgtcctgcattaagtcctgtggtggg
cggtggggccttaatttgccaattgatgttctccgtggatcacgtggcaagaaaatcgtt
gaaaacaattttgataaacttccattgcatgggcggggaaaagactatccaccaaactgg
tggaaagcacttggcagtgtgcttttagagcatgatcatttaaaggaaactgtacgtgat
acgtatagattcatcagtgttagtcctaatgggtgcaagtttctagctactgctgataaa
gtggatggagctccgctgtttttacagctgagtgaagagatgattgagctagaggggcat
ggtagttcccagtgtaaagaagggggcttaaatccttcaggtccatcagaatctgaaaga
ctttctgaggatgaattgaaaatctaccaagtactcttgaatgtcaggatgcaacttgca
caagatattggaacagcaccgtatgctatatgtggagatcagactctaagaaactttgca
aagttgaggcctagcaccgtagctaggctggctaatattgatggcgttaaccagcacttc
atctcacgatacggtggaattttcatccaaaatattacaaaattggcaaaagagttgaat
cttccattggatgattcatcggctgtagaaagtatatctgctgctccaaaacctatacaa
aataatctcccaagaaacttgggtgatgcaaaattttgttcatgggaattgtggcagaaa
atgaagttttcgttccagaaaattgcgtatttccgcagagcagtaccaataaaagagaaa
acggttatctcatacatacttgatgctgctcaagatggatgtgagatggactggagtagg
ttttgtcaggaggtagggcttacacatgagatagcctcaaagatccgtcttgccattaca
aaggttggatcacatgagaggttgaagccaattaaagaggaacttccagaaaatgtaact
tacgaggtgatcaagacattcttggtgattgagggacttgggttgtccgagcaagttttt
ggtactgttcctactgatgggatcctgtctaagacagaggagtcaccaaagcccacctcc
aatggaagtgaagttggcgaaaatgataatcagggacatagagtcctagagttagatgct
tgtgattcaagaagccctttgacaaagagaggccaaactgatggctcattgatttgtggt
gatgagccagcaagtaaactacaaaagatagacgggcaaggggtaaaatctacggcagca
gttggtgccaccgaggatgcaatactagagctagttgcaggcggcgatggggtttcgctg
gaggatgttgtgaagcacttcgatggatcgaaaagagagtgcgtcgtcgagatgttggac
agccttgaaggcaatttttcggtgtacaagaagaatggctgctacttgattttgtaa
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