Oryza brachyantha (malo sina): 102716252
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Entry
102716252 CDS
T02995
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
obr
Oryza brachyantha (malo sina)
Pathway
obr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102716252
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obr03019
]
102716252
Messenger RNA biogenesis [BR:
obr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102716252
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
102716252
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
102716252
NCBI-ProteinID:
XP_006662151
UniProt:
J3N0N8
LinkDB
All DBs
Position
10:888331..889110
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AA seq
259 aa
AA seq
DB search
MGWVLIRPVTAYNLTVEMNAIRSLISYFPYITIRAEYVDVVSALGRRKNLPPPANRYKLA
KAMVDGLDVFQLGITLCDHNGRLPVTVAPDGSDAESAWQVAFSDFDPGGHMESPAGVPAA
AFARALLEHGIVSAENRGRLTWVAFGGLYDFGFLLKLLSSGAPLPETGEGFARMLRRYLG
NVYDAKYVASRLPVAVGVDLSGGLVSVARLLGAPAVAVEEPRQAGEKSLVACEVFMRMTG
LFFAYHDVAVHLGMIDGVH
NT seq
780 nt
NT seq
+upstream
nt +downstream
nt
atgggctgggtgctcatccggccggtgacggcgtacaacctcaccgtcgagatgaacgcc
atccgctccctcatatcctacttcccctacatcaccatccgcgccgagtacgtcgacgtc
gtctccgcgctcggccgccgcaagaatctccctccgccagccaaccgctacaagctcgcc
aaggccatggtggacgggctcgacgttttccagctcggcatcacgctctgcgaccacaat
ggccgcctccccgtgaccgtcgcgccggatggctccgacgccgagtcggcgtggcaggtc
gccttctccgacttcgaccccggcggccacatggaatcgcccgccggcgtccccgcggcg
gcgttcgctcgcgcgctgttggagcacggcatcgtgtccgcggagaaccgcggccggctc
acctgggtcgcgttcggcggcctctacgacttcggcttcctcctcaagctcctctccagc
ggagcgccgctgccggagacgggggaggggttcgcgcggatgctgcgccggtacctcgga
aacgtgtacgacgccaagtacgtggcgtcgcggctgccggtggcggtgggtgtcgacctg
agcggcgggctggtgagcgtggcgaggctcctgggcgcgccggcggtggcggtggaggag
ccccggcaggctggcgagaagagcctggtggcgtgtgaggtgttcatgcggatgacgggc
ctcttcttcgcctaccacgacgtcgccgtgcatctcggaatgatcgacggcgtgcactga
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