Oryza brachyantha (malo sina): 102716302
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Entry
102716302 CDS
T02995
Name
(RefSeq) eukaryotic initiation factor 4A-III homolog A-like
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
obr
Oryza brachyantha (malo sina)
Pathway
obr03013
Nucleocytoplasmic transport
obr03015
mRNA surveillance pathway
obr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102716302
09122 Translation
03013 Nucleocytoplasmic transport
102716302
03015 mRNA surveillance pathway
102716302
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obr03019
]
102716302
03041 Spliceosome [BR:
obr03041
]
102716302
03009 Ribosome biogenesis [BR:
obr03009
]
102716302
03012 Translation factors [BR:
obr03012
]
102716302
Enzymes [BR:
obr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102716302
Messenger RNA biogenesis [BR:
obr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
102716302
mRNA cycle factors
Stress granule specific factors
102716302
Spliceosome [BR:
obr03041
]
Complex C
Other components
EJC/TREX
102716302
Ribosome biogenesis [BR:
obr03009
]
Eukaryotic type
90S particles
Helicases
102716302
Translation factors [BR:
obr03012
]
Eukaryotic type
Initiation factors
eIF-4
102716302
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_30
AAA_22
AAA
TniB
Motif
Other DBs
NCBI-GeneID:
102716302
NCBI-ProteinID:
XP_006650261
UniProt:
J3LQC6
LinkDB
All DBs
Position
3:complement(17855708..17859932)
Genome browser
AA seq
408 aa
AA seq
DB search
MAAAATAATTSRRGPGAMDDENLTFETSPGVEVISSFDQMGIRDDLLRGIYAYGFEKPSA
IQQRAVLPIISGRDVIAQAQSGTGKTSMISLSVCQIVDTAVREVQALILSPTRELAAQTE
RVMLAIGDFINIQVHACIGGKSIGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTRAIKL
LILDEADEMLGRGFKDQIYDVYRYLPPELQVCLISATLPHEILEMTSKFMTDPVRILVKR
DELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTERMRSNNFT
VSAMHGDMPQKERDAIMAEFRSGATRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIH
RIGRSGRFGRKGVAINFVKKEDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcggcgacggcggccaccacgtcccggcgcggcccgggcgccatggacgac
gagaacctcaccttcgagacctcacccggggtcgaggtcatcagcagcttcgaccagatg
gggatccgcgacgacctcctccgcggcatctacgcctacggcttcgagaagccctccgcc
atccagcagcgcgccgtcctccccatcatcagcggccgcgacgtcatcgcccaggcgcag
tccgggaccggcaagacctccatgatctcgctctccgtctgccagatcgtcgacaccgcc
gtccgcgaggtgcaggccttgattctctcaccaactagagagcttgctgcacaaacagaa
agagttatgctggctattggcgacttcatcaatatccaagtgcatgcttgtattggtggc
aaaagtattggtgaagatattagaaagcttgagcatggtgtgcatgttgtgtcaggaaca
cctggcagagtctgtgatatgatcaagaggaggacattgcgtacaagagccattaagctc
ctaattctggatgaagccgatgaaatgttgggcagaggctttaaggatcagatatatgat
gtctacagatatctacctccagaactccaggtttgcttgatctctgcaactttgcctcat
gagatcttggagatgaccagcaagttcatgaccgacccagttcggatccttgtaaagcgt
gatgagttgaccctagagggcatcaaacaattctttgttgctgttgagaaagaagaatgg
aagtttgatacactttgtgatctttatgatacactgacaatcacccaagctgtcattttc
tgcaatacgaagagaaaggttgattggcttacggaaagaatgcgcagcaataacttcacg
gtgtcagctatgcatggtgacatgcctcaaaaggaaagggatgccattatggctgaattc
aggtctggtgcaacccgtgttctaattacgacagatgtgtgggctcgaggcctggatgtt
cagcaggtctctcttgtcataaactatgatctcccaaataatcgtgaactttatatccat
cgcattggtcgatctggacgttttggtcgcaagggtgtggcgatcaattttgtcaaaaag
gaagacatccgtatcctgagagatattgagcagtactacagcacccagattgatgaaatg
ccaatgaatgttgctgatctaatttga
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