Oryza brachyantha (malo sina): 102717751
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Entry
102717751 CDS
T02995
Name
(RefSeq) endoribonuclease Dicer homolog 3a isoform X3
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
obr
Oryza brachyantha (malo sina)
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
obr03036
]
102717751
Chromosome and associated proteins [BR:
obr03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
102717751
microRNA pathway
RISC loading complex
102717751
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
DEAD
Helicase_C
ResIII
PAZ
SNF2-rel_dom
AAA_22
PCDO_beta_N
Motif
Other DBs
NCBI-GeneID:
102717751
NCBI-ProteinID:
XP_006645199
LinkDB
All DBs
Position
1:complement(30542943..30554243)
Genome browser
AA seq
1654 aa
AA seq
DB search
MNPLKRSLESFAQEDEAGKQKWQKSECQDFTPRRYQLDVYEVAMRRNTIVMLDTGSGKTM
IAVMLIKEFGKINRANNAGNVIIFLAPTVQLVVQQCEVIKIHTDLDVEQYHGAKGVDQWT
GPRWQEQLSKYQVMVMTPQVLLQALRSAFLILDTVSLLIFDECHHATGNHPYSRIMKEFY
HRSECKPSVFGMTASPVIRKGVSSHLDCEGQFCELENLLDAKIYTVSDREEIELCVPSAK
EMNRYYDPKMVCFEDLSEELVVLCSKYDALITELQNKPNCLYKDADDITKESRRRLSNSV
AKICYCLNDVGLICASEATKICIERGQEKGWLKGVVDATDQQTDASGSHLFAENSALHMK
FFEEALHLFDKRLQQGIDTLLDSENGCIEAAKTGYISPKLCELIQIFHSFSSSHHVRCLI
FVDRKITARVIDRTIKKIGRLTHFTVSFLTGGRSSVDALTPRMQKDTLDSFRSGKVNLLF
TTDVAEEGIHVPDCSCVIRFDLPRTTRSYVQSRGRARQEDSQYILMIERGNVKQNDLISA
ILRSETSMVEIDSSRESEYLLPGFVHNEEINEYSVGTTGAKVTADSSISIVYRYCQELPK
DKCYSPKPTFQFTQHDDGCVCTLKLPSSAALQLLVGPKAKNMHKAKQLVCLDACKKLHEL
GALDDHLCLSVEDTVPETLSKTKGQSSSAGIGTTKRKELHGTQRIHAWSGDWVSKRTVVK
LQCYKMNFVCDQVGQIYSDFFLLIDATLPNEVASLEIDLYLHDKMVKTLISSCGLLELDA
QQVKQAKLFQGLLFNGLFGKLFTRSKTPNALREFIFNKEDAFLWNTASLYLLLPANPSFD
SNVYINWSVIDAAASAVKFMRRIYSENKTELLGIFDCDQNVGDLIHLANKSCKVDSLKNK
VVLAVHTGKIYTALDITDLSADSTFDGSSDKKECKFQTFAEYFKKKYGIVLRHPSQPLLL
LKPSHNPHNLLSSKFRDEGNAVEKINNGTPVVNKASNRVHMPPELLIPLDLPVDILRSFY
LFPALMYRIESLLLASQLRSEIAYSDSNISSFLILEAITTLRCSEDFSMERLELLGDSVL
KYAVTCHLFLKFPDKHEGQLSSRRCHMICNNALYKLGVERNVQGYIRDAAFDPRRWLAPG
QLSIRPSPCECPVKSEAVTQDIHIIDDKTVVLGKACDKGHRWMCSKTIPDCVEAIIGAYY
VGGGLRAAMAVLKWLGVESEIEEHLIVQAMLSSSVHTYLPKDDVFEMLEAKLGYCFSVKG
LLIEALTHPSQQELGAKYCYERLEFLGDAVLDILLTRYFFNNHKDTNEGELTDLRSASVN
NENFARVAVKHNFHHFLQHSSGFLLDKITEYVNSLGNSSMDNIELSSNGLPKGPKVLGDI
VESIAGAILLDTKLDLDVVWGIFKPLLSPIVTPENLELPPFRELIEWCGKHGYFIGINCR
DQGDTVVATLDVQLKEVLLVRQGFSKKRKDAKAHAASLLLKDLEEKGLIIPKNASKTEQF
EKHCGSANHCNNLLVNAMDTPTPPNTTKQKNPTDLRNISDPMLGKALHVTVKTSKGGPRI
ALYELCKKLQWPMPTMESEKVQPSSVCSSPGGSSQKATPQAFAFASTVTLHIPNANVISQ
TGDGRADKKSSQDSAALFLLYELQRRGTLQLQEV
NT seq
4965 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccttgaagaggtcattggaatcatttgctcaagaagatgaagcaggcaaacag
aaatggcagaagagcgagtgtcaagatttcacacccagaagatatcagcttgatgtctat
gaggttgcaatgcggcggaacacgatcgtgatgcttgatacaggctctgggaagacaatg
attgctgtgatgcttatcaaggagttcggaaagataaacagagcaaataatgctggaaat
gtcatcatatttcttgcaccaacagttcaacttgttgtacagcaatgcgaggtgattaaa
atccacacagatcttgatgtggaacagtatcacggtgcaaagggggttgatcaatggaca
ggtcctagatggcaagaacaactctcaaaatatcaggtcatggtcatgacaccacaagtg
ttgctacaagcgttacgcagtgctttcttgatcttggatacagttagtctcttgatattt
gatgaatgccatcatgcaactggaaaccacccttattcaagaataatgaaggagttctat
cacagatcagaatgtaagccaagtgtgtttggtatgacagcatcacctgttataagaaaa
ggtgtctcttctcatttggattgtgaaggtcagttctgtgagttggaaaacctgttagat
gctaagatctacacagtgtcagatagagaagagatagagctttgtgttccttccgcaaaa
gaaatgaacagatactatgacccaaaaatggtttgttttgaagatttgagtgaagagttg
gttgttttatgttccaagtatgatgcattgattacagagttgcagaataagccaaactgc
ctgtataaagatgctgatgatataacaaaagaatcaaggagacgcctttccaattctgta
gcaaaaatctgctactgccttaatgatgttggtcttatttgtgcaagtgaggccaccaaa
atttgcattgaaaggggccaggagaagggttggctgaagggagtagttgatgccacagat
cagcaaactgatgcaagtggatcacacttgtttgcagaaaattcagcccttcatatgaag
ttctttgaggaagcattgcatttatttgacaaacggcttcaacaaggtatcgacacactt
ctagactcagaaaatggatgcattgaagcagcaaagacaggctatatttccccaaagctt
tgtgaactcattcagatttttcactcttttagtagctctcatcacgttcggtgcctcatt
tttgttgatcgaaagatcactgctagagtcattgaccggacaattaagaaaattggccgc
ctcacacatttcacagtttcttttcttactggagggagatcttcagtggatgctctgaca
cctagaatgcagaaggatacactggattcatttcgctctggaaaggtgaacttactattt
actacagatgttgcagaagagggtatccacgtcccagactgctcatgtgtaatacgattt
gatttgccaaggactacgcgtagctatgtgcagtcacgtggacgagcacggcaagaagac
tctcagtacatactcatgattgaacgggggaatgtgaaacaaaatgatttgatatctgcc
atcttgagaagtgagacttcgatggttgagattgattcaagcagagagtctgaatatctg
ttgcctggtttcgttcacaatgaagaaataaatgaatactctgtaggaacaacaggagca
aaagtaactgctgattcaagcatcagtattgtctaccgatactgtcaggagcttccaaag
gataagtgctactctccaaaacctacattccagttcactcaacatgatgatggctgtgtg
tgtacattaaaattaccatctagtgcggcacttcaacttctggtgggcccaaaagcaaaa
aacatgcacaaagcaaaacagcttgtttgccttgatgcgtgtaagaagttgcatgagcta
ggagcacttgatgaccatctttgtctgtctgttgaagatacagttccagaaactttaagc
aaaactaagggtcagtcatctagtgctggtataggtacaaccaaacggaaggagctacat
ggtacacaacgaattcatgcctggtctggcgattgggtgtcaaagagaactgtcgttaag
cttcaatgctacaaaatgaattttgtttgtgaccaagttggtcagatttactctgatttt
tttcttttaattgatgcaactttaccaaatgaagttgctagtttggagattgacttatat
ttgcatgacaagatggtaaaaactttgatttcttcttgtggacttcttgagttggatgct
caacaggtgaaacaagcaaagttgtttcaagggcttctcttcaatggtttatttggaaag
ctgtttactagatcaaaaacacctaatgctctgagggaattcatttttaataaagaggat
gcttttttgtggaatactgcgagtctatatttgcttttgcctgcaaatccttcttttgac
tccaatgtttacattaattggagtgtcattgatgcggcggcctcggcagttaaatttatg
agaagaatttattctgagaacaaaacagaattacttggaatatttgattgtgaccaaaat
gttggagatttaattcatttggccaacaagtcatgcaaggttgacagcctaaaaaataag
gtagttctagcggttcacaccgggaagatatacaccgctcttgacattactgatttatct
gccgatagcacttttgatggttcgtctgataagaaagaatgtaaattccagacatttgca
gaatatttcaaaaagaagtatggcatagtacttcgtcacccctcacagccactactattg
ttaaagcctagtcataatcctcacaaccttctttcctcaaagttcagggatgaaggtaat
gctgtggagaagataaataatggcacaccagttgtaaataaagcaagcaaccgcgtccac
atgcctcctgagttgctaattcccctcgatttacctgtggacattttgagatcattctat
ttgtttccagctttgatgtatcgtattgagtccttattattagctagtcaactaagaagt
gaaattgcatacagtgactccaatatatcaagttttctgattctggaagccattacgacg
cttaggtgctctgaggatttctctatggagcgcttagaattattgggagactctgtattg
aagtatgcagtgacttgtcatcttttcctgaaatttcctgataagcatgaggggcagcta
tcatcgagaaggtgccatatgatttgtaataacgcactttataagctcggagttgaacgc
aatgtacagggttacatacgtgatgctgcatttgatcctcgtcgatggctagcaccagga
cagctctctattcgcccatctccttgtgaatgccctgtaaaatctgaggctgtaactcag
gatattcatatcattgatgacaagactgttgttctagggaaggcgtgtgataagggacac
agatggatgtgttccaaaactattcctgattgtgttgaggctataattggggcatactat
gtagggggtggcttaagagcagccatggcagttctcaaatggctgggtgttgagtctgaa
attgaagaacacttgattgtgcaggctatgctgagttcttctgtgcatacttatcttcca
aaagacgatgtatttgaaatgcttgaagcaaaattagggtattgtttctcagtgaaaggt
cttttaatagaggctctgactcacccatcacagcaggagttaggtgcaaaatactgctac
gagcgcctagagttcctcggtgatgcggtcttagacattctgttaacaaggtactttttc
aataatcacaaagacactaatgaaggggaattgacggacttacgctctgcatcagtcaat
aatgaaaactttgcacgagttgcagtaaagcacaacttccatcactttctccagcactct
tctggatttctgttagacaaaattactgaatatgtgaatagcttgggaaactcatccatg
gacaacattgaactttcatctaatggactcccaaaagggcctaaagttcttggtgatatt
gtagaaagtattgcaggtgcaattcttttagacaccaaacttgatttggatgtagtttgg
ggtatttttaaaccccttctttccccaattgttacacctgagaatctggaattacctcca
ttcagagagcttatcgaatggtgcggcaaacatgggtactttataggaattaactgtaga
gatcaaggagacacagtagtggctactcttgacgtacagctgaaagaggtacttcttgtg
aggcaaggtttcagcaagaaaagaaaagatgctaaagcacacgcagcttctttacttctc
aaggatcttgaggaaaaaggacttataatcccaaaaaatgcaagcaagacagaacaattt
gaaaagcattgtggcagcgctaatcactgcaacaatttgcttgtcaatgcaatggataca
ccgactccaccaaatacaactaagcaaaaaaatcctactgatttaaggaacatttctgat
cccatgcttggtaaagcattgcatgtgaccgtgaaaacgagtaaaggaggacctcgcatt
gcattatatgagttatgcaaaaagttacaatggccaatgcctacaatggaatctgagaaa
gtacaaccaagcagcgtgtgctcctcccctggtggctcctcccaaaaagctacacctcaa
gcgttcgctttcgcttcaacagtaacattgcacatacccaatgctaatgtgatcagccaa
actggagacggccgtgcagataagaagagctcacaggattctgctgcactgttcttgctc
tatgagcttcagcggcgaggtaccttgcaactccaggaggtgtga
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