Oryza brachyantha (malo sina): 102718639
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Entry
102718639 CDS
T02995
Name
(RefSeq) cleavage stimulation factor subunit 50
KO
K14406
cleavage stimulation factor subunit 1
Organism
obr
Oryza brachyantha (malo sina)
Pathway
obr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102718639
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obr03019
]
102718639
Messenger RNA biogenesis [BR:
obr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
102718639
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mito_carr
Beta-prop_WDR5
Beta-prop_THOC3
WD40
WD40_Prp19
Beta-prop_WDR3_1st
Beta-prop_EML_2
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_WDR36-Utp21_2nd
WDR55
WD40_Gbeta
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_1st
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
WD40_RFWD3
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
Beta-prop_NWD2_C
Beta-prop_IFT140_1st
Beta-prop_NOL10_N
Cytochrom_D1
Beta-prop_IFT122_1st
Beta-prop_Nup120_160
Beta-prop_SCAP
Ge1_WD40
Motif
Other DBs
NCBI-GeneID:
102718639
NCBI-ProteinID:
XP_040377747
LinkDB
All DBs
Position
3:25590864..25601957
Genome browser
AA seq
780 aa
AA seq
DB search
MDTTTRAKIPSLHHQTEINWDNLDKTKLYVVGAGMFSGVTVALYPVSVIKTRMQVATGEA
VRRNALATFKNILKVDGVPGLYRGFGTVITGAIPARIIFLTALETTKAASLKLVEPFKLS
EPVQAAFANGLGGLSASLCSQAVFVPIDVVSQKLMVQGYSGHVRYKGGLDVAQKIIKADG
IRGLYRGFGLSVMTYSPSSAVWWASYGSSQRIIWSAFDRWNDKESSPSQLTIVGVQATGG
IIAGAVTSCVTTPIDTIKTRLQVNQNKPKAMEVVRRLIAEDGWKGFYRGLGPRFFSSSAW
GTSMIVCYEYLKRLCAKVEELVSSSALLRDHHLAAQPEIQRTRGRGGEMDAAVQEAKLLR
QVNTLIVAHLRDQNLTQAASAVAAATMTPLAPPDDDSSVGSTHQLLRLVAKGLAVERDEA
GRGGGAFDSATATGYGGLLPPPGTNAVDFSVQDVKGSSKSFPKHEARHVSDHKNVVRCAK
FSPDGKYFASGSGDTSIKFFEVAKIKQMMLGDSKDGPVRPVIRTFYDHMQPINDLDFHPV
NPILISAAKDNTIRFFDFSKTVARKAYRVIQDTHNVRSVCFHPCGDYLLAGTDHPVAHLY
DINTFTCYLSANSHNSSAAINQVRYSSTGSLYVTASKDGSLRIWDGISAECVRPIIGAHA
SSEVTSAVFTKDERYVLSCGKDSCIKLWEVGSGRLVKQYVGAVHRQYRCQAVFNQTEEFV
LSTDEQNSEVVIWDALTSENVARLPSGHTGAPRWLGHSPVEPAFVTCGNDRSVRFWKQTV
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atggatactaccactagggccaagatcccctccctccaccaccagacggagatcaactgg
gacaaccttgacaagaccaagctctatgtggtgggagccggaatgttcagtggcgtgacc
gtggcgctgtacccggtatcggtgatcaagacccggatgcaggtggccactggggaagcc
gtgaggaggaacgctctggcaacgttcaagaacattctcaaggtggacggagtgccgggg
ctgtaccgagggtttgggacagttatcacaggggccatccctgctaggattatctttctt
acggcgctcgagacaacaaaagctgcctcacttaagcttgttgagccgtttaagctgtcg
gagccagttcaagctgcctttgccaatggccttggtggtttgtcggcatctctgtgctca
caggccgtgtttgtgcccatcgatgtggttagccagaaattgatggttcaaggatattct
ggtcatgttagatacaagggtggactagatgttgctcaaaagattataaaggctgatggg
attcgggggctgtacagaggatttggcctgtctgttatgacatactcaccatctagtgcc
gtgtggtgggcaagctatgggtccagccagcgcataatttggagtgcttttgatcgttgg
aatgataaagaaagttctcctagtcagctgacaatagttggtgtccaagctacagggggg
attattgctggtgcagtgacatcctgtgtcacgactcccatagatactatcaaaaccaga
ctgcaggttaatcaaaataagccaaaagccatggaagtagttagaagattgattgctgag
gatggatggaaaggtttctaccgaggtttgggtccaagatttttcagctcatcagcttgg
ggtacatcaatgatagtttgctatgaatacctaaagcgcttgtgtgctaaagttgaagaa
ctcgtcagtagctccgcactgctccgagaccaccacctcgctgcgcagccggaaatccaa
cgcacgagggggagggggggcgagatggacgcggcggtgcaggaggcgaagctgctgcgg
caggtgaacaccctcatcgtggcgcacctccgcgaccagaacctcacgcaggccgcctcc
gccgtcgccgccgccaccatgacgcccctcgccccacccgacgacgactcctccgtcggc
tccacccaccagctcctccgcctcgtcgccaagggcctcgcggtggagcgggacgaggcc
gggaggggaggaggagcgttcgactccgccactgccaccggatacggtgggctgttgccc
ccgcccggcaccaatgccgtggatttcagtgtgcaggatgttaagggttcgtccaagagc
ttccccaagcacgaggccaggcacgtttccgatcataagaatgttgtccgatgtgcaaaa
tttagtcctgacgggaaatattttgcatctgggagtggtgacacatcgattaagttcttt
gaggttgctaaaataaagcagatgatgctaggagattccaaagatggccctgtccggcct
gtaattcgtacattttatgaccacatgcagcccatcaatgatctggattttcatcctgtg
aaccctatactgatatctgcagcaaaggacaatacaataaggttctttgacttctcaaaa
actgttgcaaggaaagcatatagagttattcaggatactcataacgttagatctgtatgt
tttcatccttgtggggattaccttttagcagggactgatcacccagttgctcatctctat
gatattaacactttcacatgctacttatcagcaaattcacacaattccagtgctgccatc
aatcaggttcgctactcttctactgggagcttgtatgtgactgcttctaaggatggttct
ctgcgtatctgggatggaatatctgctgaatgtgttcggcccataatcggagcacatgcg
tcttcagaggttactagtgcagttttcacgaaagatgagaggtatgtcctatcatgtggg
aaggattcttgtataaagctatgggaagttggctctggtcgacttgtcaagcaatatgta
ggtgctgttcacaggcaataccgatgtcaggctgtcttcaaccaaacggaggaatttgta
ctatcaaccgatgaacaaaacagtgaggttgttatctgggatgcacttacctctgaaaat
gtagcaaggttgccatctggccacaccggtgccccaaggtggcttggccactcccctgta
gaaccagcgtttgttacatgcggcaacgatagatccgtaagattctggaaacaaaccgtg
tag
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