Oryza brachyantha (malo sina): 102719379
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Entry
102719379 CDS
T02995
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4-like
KO
K18643
katanin p80 WD40 repeat-containing subunit B1
Organism
obr
Oryza brachyantha (malo sina)
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
obr04812
]
102719379
Cytoskeleton proteins [BR:
obr04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
102719379
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_THOC3
WD40
Beta-prop_WDR3_1st
Katanin_con80
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
EIF3I
Beta-prop_EML_2
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_EML
ANAPC4_WD40
Beta-prop_SCAP
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_EIPR1
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_SPT8
Beta-prop_Aladin
WDR90_beta-prop_4th
Beta-prop_WDR41
Beta-prop_IFT140_1st
eIF2A
Beta-prop_VPS8
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_IP5PC_F
Beta-prop_ACSF4
Beta-prop_RIG_1st
DUF2071
Motif
Other DBs
NCBI-GeneID:
102719379
NCBI-ProteinID:
XP_006653028
UniProt:
J3M2N8
LinkDB
All DBs
Position
4:complement(21047766..21057305)
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AA seq
937 aa
AA seq
DB search
MTTNTKRAYKLQEFVAHSSNVNCLKIGRKTSRVLVTGGEDHKVNLWAIGKPNSILSLSGH
TSAVESVNFDSTEVFVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCMSVDFHPFGEFFAS
GSLDTNLKIWDIRRKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNVVKLWDLTAGKLL
HDFKCHEGQIQCIDFHPHEFLLATGSADKTVKFWDLETFELIGSTGPETTGVRSMTFNPD
GRSLLCGLHESLKVFSWEPIRCHDTVDVGWSRLSDLNVHEGKLLGCSFNQSCVGIWVVDL
TRLEPYATGTSTKLNGHSELKSSSSSTMPLQNDSGSRANIGRLSVPQNSENNIKSSTGRL
SVSQNSDSALKETKSTTSSGLVPGTPQRAGNGSSNKTVGNSTFASSGAGLKRGSLKSNNS
SSLQNFSKIDVVPVIIPRTSSGPELATDSRTDAADVGPILSKGGRRIEIANDSRKESCDV
AATVVPRTNSRAEMASDSAPVVPRANLRMEMSSDSAPIVPKSGRRLEASVESRKESADVA
SAAAPKTNSRMEVAPDSAPLLSKASRRVESATDSRKESADVAPVVPRSTSRMEMASDSRR
ELSAGRMSPFRAQSRYGELRKLNNAKVDTDKVDSGSKNSEADDFACQIYLPRRNGILQTV
ISEETREDVKPGVTDRMGFPSSAEPNTHRSENYVSRMRKPRDNCYIEVSRAGRARSIASN
WEGRDRSPSNEEPTTSSSSSMASTGRLYPSRGSSQAAETPTVASDEDVLSVLMEQHDLFL
SSTRSRLTKLQIVHQMWQRNDIRGVIAAMEKMSDHAVSADVASVLMEKSETITLDLCTVI
LPVLTELLESKTDRHLGVSLELLVKLVRTFGSVIHSTVSAGPSSVGVDLQAEQRRERCNL
CFIELEKVKNKLPSLSRRKGAVANTAQELSLVFQELM
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atgacgaccaacaccaagcgcgcctacaagctccaggagtttgtggcgcattcatccaat
gtcaactgcctcaagattgggaggaagacctcacgagttctcgtgacaggaggagaggac
cataaggttaatctttgggctattgggaagcccaattcaattttgagtttatcagggcat
acaagtgctgttgagtctgttaattttgattccacagaagtttttgtggctgcgggagca
gccagtggaacaataaaactatgggatttagaggaggcaaaaatcgtccgcacgctcact
ggacataggtcaaactgcatgtcagttgatttccatccttttggggaattctttgcctct
gggtcattggacactaatctcaagatatgggatataagaaggaaaggttgtatccacacg
tacaaaggtcacacaagaggtgtaaatgcaattagattcacccctgatggccgctgggtt
gtgtctggcggtgaagataatgtagtcaagctctgggatctgacagctggaaagttattg
cacgatttcaaatgccacgagggccagattcagtgcatagatttccatccccatgagttc
cttctggcaacaggttcagctgataaaactgtcaagttttgggatttggagacatttgaa
ttgattgggtctactggacctgagacaacaggtgttcgatccatgacattcaatcctgat
ggaagatctctgttgtgtgggttgcatgaaagcttaaaggttttctcatgggaaccaata
agatgtcatgacactgttgatgtgggatggtctagattgtccgatctcaatgttcatgag
ggaaaacttcttggctgttcatttaatcaaagttgtgtcggaatatgggttgtagatcta
acgcgtctggagccatatgcaacgggcacttcaacaaaactaaatggccattcggagttg
aagagttcgtcaagtagcactatgccattacaaaatgacagtggttcaagggctaacatt
gggcggttatcagttccacaaaattctgagaataacataaaatcttctacaggaagacta
tcagtttctcaaaattcagattccgcactgaaagagacaaaatcaacaacttcaagcggg
ttggtgccaggcacacctcaaagagctggaaatggctccagtaacaaaacagttggaaat
tcaacttttgcatctagtggtgccggcttgaagagaggttcattgaagagtaacaactct
tctagtcttcagaattttagtaaaattgatgtggtgcctgtgataataccaagaactagc
tcaggaccagagcttgctactgattctaggactgatgctgctgatgtgggtcctattctt
tctaagggtggtagaagaatagagattgcaaatgattctaggaaagaaagttgtgatgtg
gcagcaactgttgttcccagaacaaactctagagctgaaatggcctctgattcagcacct
gttgttcccagagctaacctaagaatggaaatgagctctgattcggctcctattgttccc
aagtcaggcagaaggttagaggcttctgttgaatctaggaaagaaagtgctgatgtagca
tctgctgctgctccgaagacaaattcacggatggaagtggccccagattctgcacctctt
ctttctaaggcaagcagaagggtagagtctgctactgattcaaggaaagagagtgctgat
gtggcacctgttgttcccagatcaacttctagaatggaaatggcttcggattctaggaga
gaactttctgctggacgaatgtcaccgtttagagcccaatcaagatatggtgaactacgg
aagttaaataatgccaaagttgatacagataaagttgattcagggagcaaaaacagtgaa
gcagatgattttgcttgtcaaatataccttcctcggaggaatggcattcttcagactgta
atttctgaagaaacccgggaagatgtaaaacctggtgttactgacaggatgggattccca
agttcagccgaaccaaatacacaccgcagtgagaattatgtttctagaatgcgtaagcca
agagataactgctatattgaagtttcacgagcaggaagggcaaggtcaattgcttctaat
tgggaaggcagggatcggtcacctagtaatgaagaaccaacaacaagcagttcttcttca
atggcctctacaggccgattgtatccatctagaggaagcagtcaagcagctgaaactccg
acggtagcaagcgatgaggatgttctatctgttctaatggaacaacatgatctatttcta
agctcaactcgatctcggctgacaaaattgcagattgttcatcaaatgtggcaaagaaat
gatatacggggtgttattgcagcaatggagaagatgtctgatcatgctgtatctgctgat
gtggcaagtgttctgatggagaaaagtgaaacaataacgctagatttatgtactgttatt
ctgcctgtccttactgaacttctcgagagtaaaactgacaggcacttaggtgtttcactg
gaattattggtgaagcttgtaaggacgtttgggtcggtaattcattcaacggtatcagct
ggtccctcttctgttggtgtagatcttcaagcagagcaaaggcgggagcgttgcaaccta
tgctttattgaattggagaaggtcaaaaataagcttccatctctttccagaagaaaaggg
gcagttgcaaacacggcacaggagctcagtcttgttttccaggaacttatgtag
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