Oryza brachyantha (malo sina): 102719615
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Entry
102719615 CDS
T02995
Name
(RefSeq) polyadenylate-binding protein 8-like
KO
K13126
polyadenylate-binding protein
Organism
obr
Oryza brachyantha (malo sina)
Pathway
obr03015
mRNA surveillance pathway
obr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102719615
09123 Folding, sorting and degradation
03018 RNA degradation
102719615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obr03019
]
102719615
03041 Spliceosome [BR:
obr03041
]
102719615
Messenger RNA biogenesis [BR:
obr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
102719615
mRNA cycle factors
Stress granule specific factors
102719615
Spliceosome [BR:
obr03041
]
Complex C
Other components
Complex C specific factors
102719615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_occluded
RBD_DEAH11
RRM_7
RRM_3
RRM_YTH1
Motif
Other DBs
NCBI-GeneID:
102719615
NCBI-ProteinID:
XP_006661030
UniProt:
J3MVL5
LinkDB
All DBs
Position
9:complement(1149959..1154770)
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AA seq
653 aa
AA seq
DB search
MAAQAQAQQSPASEVGSPAAAAAAAASFPATSLYVGDLDVSVQDAQLFDVFAQVGGVVSV
RVCRDVNTRRSLGYAYVNYSSPADAARALEMLNFTPINGKPIRIMYSNRDPSLRKSGAAN
IFIKNLDKSIDNKALQDTFCVFGNILSCKVATDASGESKGYGFVQFDRDEAAQAAIDKLN
GMLMNDKKVYVGPFIRKQERDNSLGHVKFNNVYVKNLSETTTEDDLKEIFGKFGTITSAV
VMREGDGRSKCFGFVNFESPDAAAQAVEELNGKKFDDKEWYVGRAQKKSEREMELKEKFE
KNLQEAADKYQNTNLYLKNLDDSIDDDKLRELFAEFGTITSCKVMRDSNGVSRGSGFVAF
KSAEDASRALAEMNSKMIGSKPLYVALAQRKEDRKARLQAQFSQLRPVPLAPSVGPRMPM
FPPGVPGVGQQLFYGQPPPAFINPQPGFGFQQPLMPGMRPGGGPMPNFIMPMVQQGQQPQ
RPAGRRAGAGGMQQPMPMGQQQMIARGGRGYRYPTGRGMPDPAMHGVGGGVMPSPYEMGG
MPMRDAAASQPIPIGALATALANAAPDQQRMMLGENLYPLVDQLEHEQAAKVTGMLLEMD
QTEVLHLLESPEALKAKVAEAMEVLRTAQQIQTNATPEQQLASLTLNDGVVSS
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcaggcgcaggcgcagcagagccccgcctcggaggtcggctccccggcggcc
gctgcggcggcggccgcctcgttccccgccacgtcgctctacgtcggggatctcgacgtc
agcgtgcaggacgcgcagctcttcgacgtgttcgcccaggtcggcggcgtcgtctccgtc
cgcgtctgcagggacgtcaacacgcggaggtcgctcggctacgcctacgtcaactacagc
agtcccgccgatgctgcacgagcactggaaatgctcaacttcactcctatcaatgggaaa
cctatcaggattatgtattctaaccgtgaccccagcttgcgcaagagtggcgcagcaaat
atttttattaagaaccttgataagtcgatagacaacaaagctttgcaagatactttctgt
gtgtttggcaacattctttcctgtaaagttgcaactgatgcttctggagaatcaaagggc
tatggctttgttcagtttgaccgggatgaggcagctcaagctgctattgataaactcaat
ggcatgcttatgaatgacaaaaaggtgtatgttgggcctttcattcgtaagcaagagagg
gacaattctttaggccatgtcaagttcaataatgtctatgtaaagaacctgtctgagacg
accactgaagatgacttgaaggaaatctttggaaaatttggaaccatcactagtgctgtt
gtaatgagggagggagatggaagatctaagtgttttggatttgttaactttgaaagtcca
gatgctgctgctcaagctgttgaagagctgaatggcaagaagtttgatgataaagaatgg
tatgttggaagagcacaaaagaaatccgaaagggagatggagctgaaagagaaatttgag
aagaaccttcaagaagcagcagataagtatcaaaacactaacctgtacctgaagaatttg
gatgatagtattgatgatgataagttgagggaactttttgctgagtttggcaccatcact
tcctgcaaggttatgcgggattcaaatggtgtcagcagaggttctggatttgttgctttt
aaatctgctgaagatgcttcccgagcgcttgcggaaatgaacagcaagatgattggcagc
aagccgctctatgttgcgcttgcgcagcgcaaggaagacaggaaagcaaggctgcaggca
caattttcacaactgaggcctgtcccacttgctccttcagttggtcctcgcatgcccatg
tttccacctggtgttcctggagttggtcagcaactgttttatggtcagccccctccagcg
tttatcaacccacagcctggtttcggcttccagcagcctcttatgcctgggatgaggcct
ggtggaggtccaatgccaaactttataatgccaatggttcagcaaggacagcagccgcag
cgcccggctggcaggcgtgctggtgctggtggaatgcagcaacccatgccaatgggtcag
caacagatgattgctaggggtggccgtggctaccgctatccaacaggacgtggcatgcct
gatcctgcaatgcatggtgttgggggtggtgtgatgccatctccatatgagatgggtggc
atgcccatgagagatgctgctgcgtcacaacctattcctattggagcattggctactgcc
ttggctaacgcagccccggatcagcaaagaatgatgcttggtgagaacttgtatcctctt
gtcgatcagctggagcacgagcaggctgcaaaggtgactggcatgctgctggagatggac
cagactgaggtgctgcacctgctggagtctccagaagctctcaaggcgaaggttgctgaa
gcaatggaggtcctacgcacggcgcagcagatccagacaaacgccacacctgaacagcag
ctggcttccctgacgctgaatgacggtgtcgtttcgtcttaa
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