KEGG   Oryza brachyantha (malo sina): 102719666
Entry
102719666         CDS       T02995                                 
Name
(RefSeq) HBS1-like protein
  KO
K14416  elongation factor 1 alpha-like protein
Organism
obr  Oryza brachyantha (malo sina)
Pathway
obr03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:obr00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    102719666
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:obr03019]
    102719666
Messenger RNA biogenesis [BR:obr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     102719666
SSDB
Motif
Pfam: GTP_EFTU GTP-eEF1A_C GTP_EFTU_D3 GTP_EFTU_D2 MMR_HSR1 GTP_EFTU_D4 Zn_ribbon_RanBP Vps36-NZF-N ORF11CD3
Other DBs
NCBI-GeneID: 102719666
NCBI-ProteinID: XP_006653029
LinkDB
Position
4:complement(21062528..21067835)
AA seq 674 aa
MEPSRNPGPWQCTICEHGNDARHSSCEQCGVLRDFSLYFNNALEVDGRVKRRGMHSTVSV
LARTLFSPSSAKSKDVVFSGGFKVSRTATGNTQATLDALHRTYMTRKERRINIVPFKFDT
PSPDDMVATGLKSSRSIRKVDTDAPCIDVHIAEKKVMDNDSFIITEKDTTADLNSLVKSN
GFGESKNVSVDSENKTLILDHELQQLSLERKLQKSKPKIKKPVSLSLYKPEPWMLQHEDE
DIPTQLNISIVGHVDSGKSTLCGRLLHSLGKISKKQMHKYEKEAKEKGKGSFAYAWAMDE
SADERERGITMTVGVAYFDTKNYHVVLLDAPGHKDFVPNMISGATQSDAAVLVIDASIGS
FEAGMGVNGIGQTKEHSQLIRSFGVDNLIVAVNKMDSVGYSKERFNFIKSQLGTFLRSCG
YKDSAIAWVPMSAMENENLMAAASDTRLSSWYDGNCLLKAIDTLPPPYRDISKPLRLPIC
DVISSHTLGQVAIGGKLEVGAIQSGSKVLVMPSAELAVVKTIERNSYGCNLARAGDNVAI
GLQGIDPSHVISGGVICHPDYPVSVASCLELKILVLDITVPILVGLQFELHIHHAKMSAC
MVKIVSLLEQKTGKASKKRPRFLTSRQTAVIEVKLEKEVCVEEFSNLKALGRVFLRSQGN
TIAVGIVSRVREQA
NT seq 2025 nt   +upstreamnt  +downstreamnt
atggaaccatcaagaaatcctggaccatggcaatgcaccatttgcgaacacggaaatgat
gcaagacattcatcatgcgagcaatgcggtgttcttcgagatttctcgctgtatttcaat
aatgcccttgaagtggatggcagagttaaacggagaggcatgcattctacggtatctgta
ctggcaagaactcttttctcaccatccagtgcaaagtcaaaagatgttgttttctctggt
ggctttaaagttagcagaactgcaacaggaaatacacaagctacgttggatgctcttcat
aggacatatatgacccgtaaagaacgtcgcattaacatagtgcctttcaagtttgataca
ccatctcctgatgacatggttgctacaggactaaaatcatcaagaagtattagaaaagtt
gacacagatgctccatgcattgatgtccatattgctgaaaagaaggtgatggataatgat
agttttattataaccgagaaggatacaactgcagacctgaattcgcttgtaaagtcgaat
ggatttggtgaaagtaagaatgtttctgttgatagtgaaaataaaacacttattttggac
catgagctacagcagttgagtttggagaggaagctgcaaaaaagtaaacccaagattaaa
aagccagtatctttatcactgtacaagccagaaccatggatgctccaacatgaagatgaa
gatatacctacacaattaaatatttctattgttggtcatgtcgattctgggaaatcaact
ctatgtggtcgtttgttacattcgctggggaagatttcaaaaaagcaaatgcataaatat
gagaaggaagctaaagaaaaggggaaaggatcatttgcatatgcttgggcaatggatgag
agtgctgatgaaagggagcgtggaattacaatgactgtcggtgttgcatactttgacact
aaaaattaccatgttgttttgctggacgcccccggtcacaaagattttgttcctaatatg
atatctggagcaacacagtctgatgcagctgtcctagttattgatgcttctataggatca
tttgaagcgggtatgggcgtcaatgggattggacagacaaaggagcactcacagcttatt
agaagctttggtgtggataatttgatagttgctgttaacaagatggattcagtgggatat
tcaaaagagcgatttaattttatcaaatcacagcttggtacttttctgcggtcatgtggt
tataaagattcagcaattgcctgggttccaatgagtgcaatggaaaatgaaaacctgatg
gcagcagcgtcagatactcgtctatcatcatggtatgatggaaattgccttctgaaagcc
attgacacattaccgcctccttatcgtgacatttcaaagccactacgccttccaatttgt
gatgtcatttcatcacatacattggggcaagttgcaattggtggtaaactagaggttgga
gcaatccaaagtggttctaaggtcctcgtcatgccttccgctgagttagctgtggtaaaa
actatcgagcggaattcctatggttgcaatttagcaagagctggggacaatgttgctatt
ggtttgcaagggatcgaccctagccatgtcatttctggaggagtcatttgccatccagat
tacccggtttccgtggcttcttgtttggagctgaaaatactggttctagatatcactgta
ccaatactggttgggctgcagtttgagctccacattcatcacgcgaagatgtctgcatgc
atggtgaaaatagtgtcgttgctggagcagaagaccggcaaggcctcaaagaagagaccg
cggtttctcacctcgagacagactgctgtaatcgaagtgaagctggagaaagaggtttgc
gtggaagaattttcaaacctgaaagctctgggccgagttttcctacgatcgcaaggaaac
accatcgcggtgggcattgtgagccgagtccgggaacaggcttag

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