Oryza brachyantha (malo sina): 102721034
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Entry
102721034 CDS
T02995
Name
(RefSeq) WD repeat-containing protein ATCSA-1-like
KO
K10570
DNA excision repair protein ERCC-8
Organism
obr
Oryza brachyantha (malo sina)
Pathway
obr03420
Nucleotide excision repair
obr04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
102721034
09124 Replication and repair
03420 Nucleotide excision repair
102721034
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
obr04121
]
102721034
03400 DNA repair and recombination proteins [BR:
obr03400
]
102721034
Ubiquitin system [BR:
obr04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
102721034
DNA repair and recombination proteins [BR:
obr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
102721034
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_WDHD1_1st
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_SPT8
WDR90_beta-prop_4th
Beta-prop_TEP1_C
WD40_RFWD3
NBCH_WD40
Beta-prop_EIPR1
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_SCAP
WD_LRWD1
Beta-prop_DCAF4
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
Beta-prop_VPS8
Beta-prop_Nup120_160
Beta-prop_WDR35_TULP_N
Beta-prop_WDR75_2nd
Beta-prop_RIG_1st
Beta-prop_NOL10_N
WDR54
Beta-prop_DCAF12
Motif
Other DBs
NCBI-GeneID:
102721034
NCBI-ProteinID:
XP_015691946
UniProt:
J3L609
LinkDB
All DBs
Position
1:28421740..28425821
Genome browser
AA seq
452 aa
AA seq
DB search
MWCEAVRRRERGELRARRFETAARVRRTASLSLSNRKEFATPHNGAVNSLQVDLTESRYL
LSGASDGSIAIFDVQNATEYEAGLIAKHRSILLVDKQHENGHKFAVSMAIWYPVDTGLFM
TASFDQYVKVWDTNSAQVVMDFKMPGKVYSVAMSPIATTHMLIATGSADVQVRLCDIASG
AFTHTLSGHRDGIMSLEWSASSEWILMSGGCDGAIRFWDIRRAGCFRVLDQSRSQLGRRP
PFLEGTSEKDPMNSLQPSPSSKIYSAQQSTGKSKQLHSSHKSKIPRHGHVQQRLHPGLSS
SQNRATAHYGAVTGLRTTTDGMHLLSSGSDSRLRLWDIDSGCNTLVNFEAMRLQNSKPLQ
LAVTEDPSLVFVPCMASIKAYSLWSGMTFQTFRGHYEPVNCCYYSAQEQELYTGSNDRQI
LVWSPSTPAFTEMEDDGMRQRHFVVDEDNWSD
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgtggtgtgaggcggtgaggcggagggaacgcggggagctccgcgcacggcgcttcgag
accgccgctcgggtacgccgcaccgcctcgctctcgctctccaaccgcaaggagttcgcc
accccgcacaacggcgccgtcaactccctccaggttgatttgacagagagccggtacctg
ctctcaggggcatcagatgggtcaatcgctatattcgacgtgcagaatgcaactgaatac
gaagctgggctcattgccaagcacaggagcattcttcttgtggacaagcaacatgaaaat
ggccacaaatttgctgtatcaatggctatatggtatcctgtggacactgggctgttcatg
acagcttcttttgatcagtatgtcaaagtttgggatacgaattcggctcaagttgtcatg
gattttaagatgccaggaaaagtgtacagcgtagcaatgtccccaattgcaacaacacat
atgcttatcgctactggaagtgcagatgttcaggtccgcttatgtgacattgcttctgga
gcctttacccacacgctatccggtcatcgtgatggtatcatgtctttggagtggtctgct
tcaagtgaatggattttaatgagtggtggttgtgatggggcaatacgattttgggacata
agacgagctggatgctttcgtgttcttgatcagtcacggtctcaactaggaagacggcct
ccttttctcgagggcacctcggaaaaggatcctatgaactctttacaaccttcaccttct
tcaaagatctactcagcacagcagagcacaggcaagagtaagcagttacattcttcgcac
aaaagtaaaatccctagacatggacatgtccaacagagattgcaccctggtttgtcttcc
agtcaaaatcgtgcaacagctcattatggtgctgttacaggattaagaacaactactgat
gggatgcaccttcttagctcaggatctgattctcgcttaagactttgggatattgattca
ggctgcaatactttggtcaattttgaagctatgcgattacagaatagcaaaccactacaa
ttagctgtcactgaggatccatcacttgtatttgtcccatgcatggcaagcattaaggca
tacagtttatggtctggtatgacatttcaaacattccgtgggcactatgaacctgttaat
tgctgctactatagtgcacaagaacaagagctttatactggcagcaatgacagacaaatt
cttgtgtggtctccttcaactccagcatttactgaaatggaagatgatggcatgaggcaa
agacattttgtagtcgatgaagataactggagcgactaa
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