Oryza brachyantha (malo sina): 102721481
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Entry
102721481 CDS
T02995
Name
(RefSeq) uncharacterized protein LOC102721481 isoform X1
KO
K14311
nuclear pore complex protein Nup188
Organism
obr
Oryza brachyantha (malo sina)
Pathway
obr03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
102721481
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obr03019
]
102721481
Messenger RNA biogenesis [BR:
obr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
102721481
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RICTOR_M
Motif
Other DBs
NCBI-GeneID:
102721481
NCBI-ProteinID:
XP_006661640
LinkDB
All DBs
Position
10:1748027..1777891
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AA seq
1965 aa
AA seq
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MASGGASAPTTASTYAAAAAASKTVAASLWWDRFVDLADDLDRAAAAGAVPDALAERIKA
HHAWLRGSVSVFGKPNDSSRTALDASEVVVGKHRLAVKPELKVAALHLSKCMNLDEVQSY
ILVKRTSENTPTALDAGTQEFVRQVSLQYYLERQCLLKCIRRIFVHANDGSESIAAVKEE
ASVLVSEGMEQRLLSIVGDSLASAVSAKGGSEFTISWLEETLIEINLIFDILFLFLYDNL
SRCNGRMWITLCLIFKDMLSGSYDVGKFAVSVEAKSSFHYAKAQLLFILIETLDFETLLR
MIRDEVPFSGGYSTFSLGDILEMDVEVSKLSEFAVVESGPLILAWAAFLCLVMSLPGSNT
NLEIDHTSYARRAFELAPFNYLQGVLCSSIFRESDGPVSGFRGILRTFISAFVASYEISY
QTEDSSLGMILNILCEVYDGEESLCMQFWDKDSFIDGPIRSVLHMVEKQYPFQISELIRF
LSAVCNGSWPAQCVYSYLERMNGVTTLYAVPSGIKDNVNYYDQIETHRPISIPSIEGITV
PVGSHGYILKVLEDDVALVRWEFPHSGVFFVLVILAQDIHACNYEEACDIMDLLYKMVLS
NKDLCFALLHADKSLAVQMSQNLGYTEKHVRIDIVKIFCTSIFKYMEDPNNACIMSKTLG
MLAEMLNCVSYHVFDVVLECGFFTTQSGGISSDWLLSGALAKMLFATSEDNGDCSPLTTA
VLDFALQVLRKGAAADDIISSFIVFSVQYIMVNHMNWKYKKHSRWKITLKVLDLVMSCIQ
VKSFSPRLGGIIWEILLYDSSIHNVLLHILSMSTQLLEHSQGSYCGDLKDTEDIHLVLCR
GLDIVFYMLSNLPEELVPCPPFVTMILSSSSKPLPFITAAISLMSIQNSAIQVASARVFS
ILCFTAYKAQPQLMENANFVVNGSEISRLQTSISCILDEVEKIDDCLVVAIFNLLTSAAR
YQPALLISLVEQSTGVQADSDSSVHKQNSKFSVLNPSGSTPILVEQILGYIGRSTELMDR
SPSILSGVLDLLKALWESGVQFIYILEKLRSSSTFWENLSRCIRATFDGYPIDSVEPVDE
KFSFRYYCLGTIFEIMSYELFLQDKLRTESKTSEPTPDGSKQPKEPSVASCPSDTVLKWL
DGATLEDLIKNLSCNGYQNGLLHRAKVASCLCIIRLSTKLSSGETGSLSFSLVKKIQTVS
GKLLQHRAFLALVSQYALHGYSGEQDLTNLIISDLYYHIHGELEGRQITPGPFQELLCFL
LEFKVFEHNPFEQIQKTFPAGNGISLFDVLQIHDELGVELWNHSDWKTYKDVAEKMLDIM
HKANLMKCQVDAKLCALRSLVAFLSVCTGTSSYEKFDLLGGGISITTTQSAVRYACKSLQ
SAVDSLTPEFDNSEVLFPPLSGQVDLLLTITRILLNHARQSKSSRHLYPVIILVIKTSGA
SASFLFNLMPSNPALKQPVKSLLVLFLSLFEFIYSKDDMKDRSEDVNTFGELSLLSMSFL
PVLCKLAESREYSDLAIASMDIILKAFLPSNVWVPILQKHLRLQVILQKCQNGALLCTQV
ILNFLLTMGRTKDGAKILQSANIFAFIKVLLSQMSLDDSCLRNSLSTQTKDVKIWGLGLA
IVSSLNHCMDDDISRNSVANSTISFLSGQVPFMSSYLSAQSVNTHQSKKRTLVQKSQTSL
SALSLTENILTLLCILAKYHFPRDTSMKEVDSELREIIIHLLAFISRGSARTGDSPNWNS
SFICPPIIKEEMSLNEEPPLIRSKYGWFRFAASCTLSAPSVPGPPSAALSLAIRDKSPGG
SDSTKQTRFTEMLAVQIYRIAFLIMKFLCSQAKEAVKRAEELEFLDLAHFPELPMPDILH
GLQDQVVSIVTEVLEANLTTALNAETQTVCQLLLVILETSLYMELCVSQSCGIRPVQGRL
EDFSKGIKAMVYASEKHSGFKPWVRSLAQIITLLYPGMVQSNNLV
NT seq
5898 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcggcggcgcctcggcccccaccaccgcctccacctacgctgccgccgccgcc
gccagcaagactgtggccgcctcgctgtggtgggaccggttcgtggacctcgccgatgac
ctcgaccgcgccgccgcggctggcgccgtcccggacgccctcgcggagcggatcaaggcc
caccacgcgtggctccggggctcggtgtccgtgttcgggaagccgaatgattcgtcgcgg
accgcgttggatgcctccgaggtggttgttgggaagcaccgtctcgctgtcaagcccgag
ctcaaggtggccgcgcttcacctgagcaaatgcatgaacttggatgaggtgcaatcatac
attctggtcaagagaacttcagaaaacactccaacagcccttgatgctggtactcaagag
tttgttcgtcaggtctctctacaatattaccttgagcgtcaatgcttactgaagtgcatc
cgaagaatctttgttcatgcaaatgatggttctgaatcaattgctgctgttaaagaagag
gcctcagttttagttagtgaagggatggaacagagactactatccattgttggagattcc
cttgcatctgcagtctccgcgaaaggaggatctgaatttacgatttcttggctggaagaa
acgctgattgaaattaacttgatttttgacatcttgtttctttttctctatgataacctt
tcaaggtgtaatggtaggatgtggataaccttgtgtttgatttttaaggatatgctatct
ggttcttatgatgttggaaaatttgctgtatctgttgaagcaaaaagttcgtttcattat
gctaaagctcaactgctgtttattctcattgaaacactggattttgaaactctactccgg
atgatccgcgatgaagttccttttagcggaggctattccacattttctcttggtgatatt
cttgaaatggacgttgaagtatcaaaattatctgaatttgcagtggtagaatcaggacca
cttattcttgcatgggcagctttcctctgcctggtcatgtcgctcccaggaagcaatacc
aatttagaaattgatcacacatcttatgcccgacgtgcctttgagttggcaccattcaat
tatttacaaggggttctgtgctcaagcatcttcagggaatcagatggtcctgtttctggt
tttcgtggcatattgagaacattcatttcagcatttgttgcttcatatgagatctcttat
cagacagaagacagctctcttggcatgattttaaatattctatgtgaagtttatgatgga
gaggaatctctctgcatgcaattctgggacaaagatagttttattgatggtccaattaga
tctgttcttcatatggtggaaaagcagtatccttttcagatatcggagttgattcgcttc
ttatcagctgtttgcaatgggagttggcctgctcagtgtgtatatagttaccttgagagg
atgaatggggtgactacgttgtatgcagttcctagtggcattaaagacaatgtgaactat
tatgatcaaattgaaactcatcgtccaatcagcattcctagtattgaaggaattacagtt
cctgttggaagccatggctacatcttgaaagttcttgaagatgatgttgcattagttcgc
tgggagtttccacattcaggtgtgttctttgtgctcgtaattttggcacaagatattcat
gcatgcaactatgaggaagcttgtgatataatggacttactgtataagatggtattgtca
aacaaggatctgtgctttgctttgctgcatgctgacaagtcgctagctgttcaaatgtca
cagaacttggggtatactgagaagcatgtcaggattgatattgttaaaattttttgcacg
tccattttcaaatatatggaagatccaaataatgcttgcataatgtctaaaacccttggc
atgctggcagaaatgctcaattgtgtttcataccatgtgttcgatgtggtgttggagtgt
ggttttttcactacacaatcaggtggtatctcaagtgattggcttctttctggtgcgcta
gcaaaaatgctttttgctacctctgaggacaatggagactgttctccacttacaactgca
gtgcttgattttgccctgcaggttttgcggaaaggagctgctgctgatgatataatatca
tcattcatcgtattttcagttcaatacatcatggttaatcatatgaactggaaatacaag
aagcatagtcgctggaagataacacttaaggtgcttgatttggtaatgagctgtattcaa
gtcaaatcattctcaccaaggctcggtggcatcatttgggaaattctactatatgattct
tctatccacaatgttcttttgcatattttgtcaatgtcaacgcaattgctggaacactca
caaggcagctactgtggtgatcttaaggacactgaagacatacaccttgtcctttgccgt
ggacttgatattgtattttacatgttatccaacctaccagaggagttggttccatgtccg
ccttttgttactatgattttgtcatcctcatcaaaaccattgcctttcatcacagctgca
atatcgttaatgtccattcagaattcagctatacaagttgcttctgctagagtattttca
atactgtgcttcactgcttataaagcccagcctcaactcatggaaaatgccaactttgtt
gttaacggttcagagatttcgagactccaaacaagtatttcctgcattcttgatgaggta
gagaaaattgatgattgtttggttgttgctatattcaatcttctgacttctgctgcccgt
tatcagcctgctcttcttatttccctggtagaacagagtacaggggtgcaagctgattct
gatagttccgtgcataagcagaacagtaaattttctgtactcaatccttcgggaagcact
cctatacttgttgagcaaatcttgggttatattggacgatccactgagcttatggataga
tctccctctatattatctggtgttcttgatctactgaaggcattatgggaaagtggtgtc
caatttatatacattctagaaaagctgagaagttctagtacattctgggagaacttatcg
cgctgtattcgtgccacttttgatggttaccctatcgacagcgttgagcctgttgatgaa
aaattttcttttaggtattattgtcttggtacaatttttgagataatgtcatatgagttg
ttcttgcaagataagctgcgtacagaatcaaaaacttctgaacctacccctgatggttca
aagcaaccaaaagaaccttctgttgcatcttgtccaagtgacacagtgctcaaatggctg
gatggtgcgactctggaggatttgataaagaatctgtcgtgcaacggataccaaaacggt
cttcttcatcgtgctaaggtagcatcctgcctttgcattatccgtctatcaacaaagcta
tccagtggtgaaactggcagcctgtctttctcgctagtgaagaagattcagactgtatct
ggcaaattgttgcaacaccgtgcattcttagctctggtttcacaatatgcccttcatggt
tacagcggtgaacaagatcttaccaacttgataattagtgatctttattatcatatacat
ggagaactcgaaggtcgtcagattactcctggtccgtttcaggagctgctgtgtttcctt
ctagaatttaaagtttttgaacacaatcctttcgagcaaatacagaaaaccttcccagct
ggcaatggcatttctttgtttgatgttctgcaaatacatgatgaacttggagttgaactt
tggaatcattcagactggaagacttataaagacgtagctgaaaagatgttggatattatg
cataaagcaaacctgatgaaatgtcaagttgatgcaaagctttgcgcattgagatcatta
gtagcatttctatcagtgtgcactggaacaagttcatatgagaagtttgacttgcttggt
ggagggatttcaataacaactacacaatcagcggttagatacgcatgcaaatctctgcag
tcagctgttgactcactcactcctgaatttgataacagtgaggttttatttcctcccttg
tctggacaagtggatttattgcttactattaccaggatcttacttaatcatgctaggcaa
agcaaaagttcaagacatctctatccagttatcatactagtcataaaaacttcgggtgcc
agtgcttcctttttgtttaatctcatgccatccaatcctgctcttaagcaaccagtgaag
tccctccttgtcctgtttttgtcattgtttgagttcatttacagcaaggatgacatgaaa
gatagatctgaagatgtcaatacatttggggaattatcccttttaagtatgagcttctta
cctgtgctatgtaaattggcagagagcagagaatattctgatcttgctattgcatcaatg
gacataatattgaaagcctttttaccttctaatgtatgggtgcctattctacaaaagcat
cttcgtctccaggttatactacaaaaatgccaaaatggggctttattgtgtactcaagtc
atattgaattttctcttgaccatgggacggacaaaggacggtgctaaaattcttcagtct
gccaatatttttgcttttataaaggtacttctgagtcagatgtctctggatgactcctgt
ttgagaaattcattgagcacccaaacaaaggatgtgaaaatctggggtttgggtcttgct
attgtctcctctttgaaccattgcatggatgatgatatttcccgcaacagtgttgcgaac
agtactatcagcttcctttcaggacaagtgcctttcatgtcgtcttatctatctgcacaa
agtgttaacactcaccagagcaagaaaaggacactggtacaaaagtcacagacatcactg
tcagccctgagccttactgagaatatcctcacacttctctgtattttggccaagtaccat
ttcccacgggacacaagtatgaaggaagtagattcagaattaagggagattattatccac
ctgcttgcatttataagcagaggaagtgcaagaactggtgattccccaaactggaactca
tcctttatttgtcctcctattattaaagaggaaatgtcacttaatgaagagccaccactt
attagaagcaaatatggatggttccgatttgctgcaagttgcaccttgtcagctccatct
gttcctggtcctcccagcgcagcattatcgcttgcaattagagacaaaagtccaggaggt
tctgattctacgaagcagactcgttttacggagatgctagctgtacagatctatagaatt
gcttttcttattatgaagttcctgtgcagtcaagcaaaagaggcagtgaagagggctgaa
gaactggagtttcttgaccttgcacatttcccagaacttcccatgccagatattcttcat
ggcctgcaggatcaagttgtttctattgtcactgaagtattagaggcaaatttaactact
gcactcaatgctgagacacagacggtgtgccaacttctgttggtaatacttgaaacatca
ctttacatggaactttgtgtatcccagtcctgtggcatcagaccagtgcagggtcggctt
gaagatttctccaagggaatcaaggccatggtttatgcttcagagaagcattctggtttt
aaaccatgggtcaggtcacttgcacaaattatcactcttctttatcctggaatggtacaa
agtaacaatcttgtataa
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