Oryza brachyantha (malo sina): 102721707
Help
Entry
102721707 CDS
T02995
Name
(RefSeq) regulator of nonsense transcripts UPF2
KO
K14327
regulator of nonsense transcripts 2
Organism
obr
Oryza brachyantha (malo sina)
Pathway
obr03013
Nucleocytoplasmic transport
obr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
102721707
03015 mRNA surveillance pathway
102721707
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obr03019
]
102721707
Messenger RNA biogenesis [BR:
obr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
102721707
mRNA cycle factors
P-body specific factors
102721707
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
PsiA
Motif
Other DBs
NCBI-GeneID:
102721707
NCBI-ProteinID:
XP_006647558
UniProt:
J3LF14
LinkDB
All DBs
Position
2:complement(18758296..18769308)
Genome browser
AA seq
1190 aa
AA seq
DB search
MESTQNENSRETKQDDETRQSKQDDEEARLEEYKKLIDQKTALRRSNLTPERPDANYLRT
LDSSIKRNTTVIKKLKTINDEQKDGLMDELKSVNLSKFVSEAVSYICEAKLRSADIQAAV
QVCSLLHQRYKDFSPCLVQGLLKVFFPGKSGDDLDADKNSRAMKKRSTLKLLIELYFVGI
VEDASIFVNIIKDLTSLEHLKDREATQANLSLLSAFARQGRFFIGLQSHGQEAYDELFKD
LNVTADQKKFFKKALHSYYDAVAELLQSEHASLRLMEAENAKVLTAKGELSDENTASYEK
LRKSFDQLQRGVSSLAEALDMQPPVMPDDGNTTRVTTGSDVAPPSTKEPSALEPIWDDED
TKAFYESLPDLRAFVPAVLLGEAEPKLNEKGREQPESIAEQDIEVHDTAQTSSITEYQLE
GKADDGVKDSEEKDKDKGKGADKEKSKEKDFDRKEREKEKIRAVDGASLDNLLQRLPGCV
SRDLIDQLTVEFCYLNSKASRKKLVRTLFNVPRTSLELLPYYSRLVATLSTCMKDVPSML
ISMLEEEFNFLINKKDQINIETKIKNIRFIGELCKFKIAPAALVFSCLKSCLDDFSHHNI
DVACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPER
SARVSKVRPPLHQYIRKLLFSDLDKSSVEHILRQLRKLPWVECQQYLIKCFLKVHKGKYS
HVHLIALLTAGLSRHHDDFAVAVVDEVLEEIRVGLELNDYGMQQRRLAHMRFLGELYSYK
HIDSSVVFETLYLIIVFGHGTPEQDVLDPPEDCFRIRLIITLLQTCGHYFNRGSSKRKLD
KFLLHFQRYIISKGPLPLDIEFDVQDLFSELRPNMARYSSLEELDAALAELEESERAASV
EKPESEKLSDSESQKVQPHDTAFSANGRGSANGAEENGKDHEEGADTESYSGSGSTDGHE
DEEDLMFEEKSNDASENEGDDEDDGMPAGSDEDEGVEVRHKVVQVDPKEQEDFDRELKAL
LQESLESRKSEVRPRATLNMMVPMNVLEGSKDPRAVESESGEETVDEEGGSAGGGSKVRV
KVLMKKGHKQQTKQMFIPGDCSLVQSTKQQEAAELEEKQSIKRRILEYNEREEEEMNGGS
SQMGNWSQGGSSTGSSIRSGGRGSWDGSIRGARQRHHIAGGFYHSYGRRR
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atggagagcactcagaatgagaacagcagggaaaccaaacaagatgacgaaacacgccaa
agcaagcaagatgatgaggaggctcgtcttgaagaatacaaaaaacttattgaccaaaag
actgccctccgccggagcaacctaacccctgaaaggcctgatgcaaactacctgaggact
ctagactccagtattaaacgaaatacaacagttataaagaaactcaaaacaataaatgat
gaacaaaaggatggattgatggatgagttgaaaagtgttaacttgagcaaatttgtcagt
gaggcagtttcttatatttgtgaggccaaacttcgatctgctgatatacaagctgctgtt
caggtctgctccctgcttcatcaaagatacaaggacttctctccttgtcttgtacaaggg
ctactgaaggtattctttcctgggaaatctggagatgatttagacgcggacaaaaactca
agagcaatgaagaagagaagcacactgaaacttctaattgaactttattttgtggggatt
gtggaagatgctagcatatttgtaaacattataaaagatcttacatcactagagcacttg
aaggaccgggaagcaactcaggcaaatttgtctcttctttctgcctttgctcgtcaaggg
agatttttcatagggttacagtctcatggtcaagaagcttatgatgagttatttaaggat
ctaaatgttacggctgatcagaaaaagttcttcaaaaaagccttgcattcttactatgat
gctgtagctgaactactccaatcagaacacgcgtctcttcgtctgatggaggcagagaac
gcaaaagttttaactgccaaaggtgaactaagcgacgagaacactgcctcatatgaaaaa
ctccggaagtcttttgatcagttacaacgtggtgtatcctcgttagctgaagctcttgac
atgcagcctccggtgatgccagatgatggaaacacaacaagggttaccacaggaagtgat
gtagccccaccttctacgaaagaaccatctgcactggaacctatctgggatgatgaggat
acaaaagctttttatgaatctttacctgatctcagagcatttgtgcccgccgtgttgtta
ggagaagccgaaccaaagttgaatgagaagggtcgtgaacaacctgaatccattgcagaa
caagatattgaagtacatgatactgctcaaacttcttctatcactgaatatcaactggaa
ggaaaggcagatgatggagtgaaggatagtgaagaaaaagataaagataaggggaaaggt
gcagacaaggaaaaatccaaagagaaggattttgacagaaaagaaagagagaaggagaaa
ataagagccgtggatggtgcaagtttggacaacctgcttcagagactaccaggatgtgtt
agccgtgatctcattgaccaattgacggttgagttttgctacctaaattctaaagcaagt
cgaaagaaacttgtgcgaacattattcaatgtcccaaggacttcactggaacttttgcct
tactattctcgtctggtggctacactgtcaacatgtatgaaagatgttccaagtatgctt
atttctatgcttgaagaagagttcaactttttaataaataagaaggatcagatcaacatc
gaaacaaaaattaaaaacattaggtttattggggagttatgtaaattcaaaattgcacct
gcagctcttgtttttagctgcttgaagtcatgcctggatgatttcagtcatcataacatt
gatgtggcctgcaatctactcgagacttgtggacgttttctgtatcgttcacctgaaact
actattcgtatggccaacatgctggagatactgatgcgattgaaaaatgtgaagaatttg
gatcctcgccatagcacacttgtagaaaatgcctactacctttgtaaaccacctgaaaga
tctgctcgagtttcaaaagttcggccacctctgcaccaatacataaggaaattacttttt
tccgatcttgataaatcaagtgttgaacatattcttcgccaattacgcaagctaccttgg
gtggaatgtcagcaataccttataaagtgctttctaaaggttcacaagggaaaatacagc
catgttcatctgattgcccttctcactgctggtcttagtcgccatcatgatgactttgct
gttgcagtggtagatgaggttttagaggagataagggtaggtctggagctgaatgactat
gggatgcaacaaaggcgtcttgcccacatgcgattccttggagagctatacagctacaag
catattgattcatcagttgtattcgagacactgtatcttatcattgtatttggtcatgga
actcctgagcaagatgtgttggatccaccagaagattgcttcaggatcaggttgatcatt
acacttctgcagacttgtggccactatttcaacagaggctcttcaaaaagaaagcttgac
aagttcttgctgcattttcaaagatatattattagtaaagggcccttaccacttgacata
gaatttgacgttcaggatttgttttctgagctaagaccaaacatggctaggtattcatca
ttagaagaactagatgctgcattagctgagctcgaagaaagtgaacgtgcagcctcagtt
gagaagcctgaaagtgaaaagctttcagacagcgaatctcagaaagtgcagccacatgat
actgccttttctgctaatggcaggggctcagcaaatggagccgaggaaaatggcaaggat
catgaagaaggagcggacactgaaagctattcaggtagtggtagcactgatggtcatgaa
gatgaggaagatcttatgtttgaggagaaatcaaatgatgcatctgagaatgaaggtgat
gatgaggatgatggcatgcctgctggttctgatgaagatgaaggtgttgaggttagacat
aaagttgtgcaagttgatccaaaggagcaagaagactttgaccgagagctgaaagctctt
ctacaggagagcttggagtcacggaaatcagaggtgcggcccagggccactttgaacatg
atggtaccaatgaatgtcctcgagggttccaaggacccaagggccgtcgagtccgagagt
ggagaagaaactgtggatgaagagggtggtagtgctgggggtggcagcaaggtgcgtgtt
aaggtgctgatgaagaaagggcacaaacaacaaactaaacagatgttcattcctggtgac
tgctcacttgtgcaaagcacaaagcagcaagaggctgctgagcttgaggagaagcagagt
attaaacgcaggatccttgaatacaatgaaagggaggaggaagaaatgaacggtggatcg
tcacagatggggaattggagtcaaggagggagcagcaccggcagcagtattagatcaggt
ggacggggtagttgggatggctcgatcagaggagctcggcagcggcaccacattgctggt
ggtttctaccatagttatggcagaagacgatga
DBGET
integrated database retrieval system
