Oryza brachyantha (malo sina): 102721890
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Entry
102721890 CDS
T02995
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 40 isoform X2
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
obr
Oryza brachyantha (malo sina)
Pathway
obr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102721890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
obr03041
]
102721890
03009 Ribosome biogenesis [BR:
obr03009
]
102721890
Enzymes [BR:
obr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102721890
Spliceosome [BR:
obr03041
]
Complex A
U1 snRNP components
U1 related factors
102721890
Complex B
102721890
Ribosome biogenesis [BR:
obr03009
]
Eukaryotic type
Pre-60S particles
Helicases
102721890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
102721890
NCBI-ProteinID:
XP_015699300
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All DBs
Position
1:15489761..15495133
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AA seq
654 aa
AA seq
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MNDPWLSEAASRDAVRAVSTSPCIQRAGFSSPTPIQAQSWPIALQNQDVVAIAKTGSGKT
LGYLLPGFLHIKHLQNNPRSGPTVLVLAPTRELATQILEEAVKFGRSSRISSTCLYGGAP
KGPQLRDLDRGVDVVVATPGRLNDILEMRRISLKQVSYLVLDEADRMLDMGFEPQIRKIV
KEIPPRRQTLMYTATWPKEVRRIADDLLVHPVQVTIGSVDELVANSAITQNVELITPSEK
LRRLEQILRSQDSGSKVLIFCTTKRMCDQLARTLTRQFGASAIHGDKSQSEREKVLSHFR
SGRSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVAYTFFCDQ
DSKYAADLIKILEGANQRVPRDLVDMASRGGRGRKRNRWATTRSDRGGSRSELDSRYGGR
DGLSGSSARLESSRSSRRHDYGDDGRSRRSGRGRSRSRSRSDSDRYSRSPKKSRRHSRSR
TRSRSQSRSRSRSYTRNRRASRSRSRSPGASRRHERSAAGSGPEHPDSGHVERKSTPEVD
PSRNHTNHSDLKDDQRPEDEKIGKVDLDRSPTPQDDKSGPYSPAYNGKASRSVSPSVQVE
GNNKAPEVSENPNPSSPPQPSKTREDEEEGMIDEDGEIADDPRASATVQNGGDN
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgaacgatccatggctgagcgaggctgcctccagggatgctgttagagccgtttctact
tcaccttgcatccaacgtgctggattctcaagtccgacaccaatccaagctcagtcatgg
ccaattgccttgcagaatcaagatgttgtagctattgcaaagacaggatctgggaaaact
cttgggtatctacttcctggattcttgcatattaagcatctgcaaaacaacccgaggtct
ggtccaacagtgctggttttggcaccaacaagagagcttgcaacacagattttggaagaa
gccgttaaatttggcagatcgtcaagaatttcttccacgtgcctatatggtggtgctcca
aaaggtccccagctaagagatttggatagaggggtcgatgttgttgttgctacacctgga
aggttgaacgacattctagaaatgcgaaggataagccttaagcaagtatcgtaccttgtt
cttgatgaggctgaccggatgttggacatgggtttcgaaccacaaatacgtaagatagtg
aaggaaattcctcctcgtcggcaaacccttatgtacactgctacttggcccaaggaagtt
agacgaattgcggatgatcttcttgttcaccctgtccaggttactattggaagtgttgat
gaacttgttgccaatagtgctattactcagaatgtggagctgatcacaccatcagaaaag
cttcgacgtcttgagcaaattttacgatcccaggattcaggttcgaaggtactcatattc
tgcactactaagaggatgtgcgaccaacttgcaaggacacttactaggcaatttggagct
tctgccattcatggtgacaagtcccaaagcgaaagggagaaggtccttagccattttcga
tctgggcgatctcctattttggttgcaacagatgttgctgcacgaggcttagacatcaaa
gatattagggttgtgatcaattatgacttccccactggcattgaagattatgttcacagg
attggcaggactggaagggccggtgctactggtgtggcctatacgtttttctgtgaccag
gattcaaaatatgctgccgatcttattaaaattctagaaggtgcaaaccaacgtgttcct
cgtgacttagtggacatggcttctcggggtgggcgtggcaggaagcgtaaccggtgggca
actacccgctctgacaggggtggttcgcgctctgaactggattcaaggtatggtggaaga
gatggactgtcaggatcttctgcgagattggagagtagtcgcagtagtcgcaggcatgac
tatggcgatgatggacggtctcgcaggtctgggagaggtcgcagtaggagccgtagcagg
agtgatagtgataggtatagccgaagtcctaaaaagtcacgccgccatagccgtagcagg
accagaagtcgcagccaaagcaggagcagaagcaggagttacactaggaaccgccgtgct
agccgcagcaggagccgtagcccaggtgcgagccgaaggcatgaaaggagtgctgctggt
tctggtcctgaacaccctgactctgggcacgtagagcgcaaaagcacaccagaagttgac
ccatcgagaaaccatactaaccactctgacctgaaagatgaccaacgaccggaggatgag
aagataggaaaggttgatcttgatcggtcgcctactccgcaagatgacaaatctggccca
tatagtcctgcttacaatggaaaagccagtcgctcagtgagccccagtgttcaggtggag
ggaaacaacaaagctccagaggtatctgagaatcccaatccttcatcaccaccccagcct
agcaagaccagggaggatgaagaggaaggcatgatagatgaggatggagagatagctgat
gatccccgggcaagtgcaaccgtgcagaatggtggcgataactga
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