Oryza brachyantha (malo sina): 102722281
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Entry
102722281 CDS
T02995
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B
KO
K07466
replication factor A1
Organism
obr
Oryza brachyantha (malo sina)
Pathway
obr03030
DNA replication
obr03420
Nucleotide excision repair
obr03430
Mismatch repair
obr03440
Homologous recombination
obr03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
102722281
03420 Nucleotide excision repair
102722281
03430 Mismatch repair
102722281
03440 Homologous recombination
102722281
03460 Fanconi anemia pathway
102722281
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
obr03000
]
102722281
03032 DNA replication proteins [BR:
obr03032
]
102722281
03400 DNA repair and recombination proteins [BR:
obr03400
]
102722281
Transcription factors [BR:
obr03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
102722281
DNA replication proteins [BR:
obr03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
102722281
DNA repair and recombination proteins [BR:
obr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
102722281
MMR (mismatch excision repair)
102722281
DSBR (double strand breaks repair)
HR (homologous recombination)
102722281
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
DUF223
Motif
Other DBs
NCBI-GeneID:
102722281
NCBI-ProteinID:
XP_006649629
UniProt:
J3LLD9
LinkDB
All DBs
Position
3:5146365..5149815
Genome browser
AA seq
632 aa
AA seq
DB search
MDADAAPSVTRGAVAFILENPSPAAADVPGIVLQVVDLKPIGSRFTFMASDGEAKIKTML
PTQFLPEVRSGNLQNLGLIRVLDYTCNTIPSQSEKALIITKCEVVAKALDSEIKSEADEQ
EEKKPAIVLNPKEESVEPAALSKPTNAPPPPAPIALKPKQEVKSASQIVYEQRGNAAPAA
RLAMTRRVHPLISLNPYQGNWVIKVRVTSKGNLRTYRNARGEGCVFNVELTDEDGTQIQA
TMFNEAAKKFYPMFELGKVYYISKGSLRIANKQFKTVHNDYEMTLNENAVVEEAEGETFI
PQIQYNFVKIDQLGPYVGGRELVDVIGVVQSVSPTLSIRRKIDNETIPKRDIVVADDSSK
TVTISLWNDLATTTGQELLDMVDSAPIVAIKCMKVSDFQGLSLSTVGKSTIAVNPDLPEA
EKLRAWYDSEGKGTSMASVGSDMGASRAGGARSMYSDRVFLSHITSDPNLGQDKPVFFSL
NAYISLIKPDQTMWYRACKTCNKKVTEGIGSGYWCEGCQKNDAECSLRYIMVIKVSDPTG
EAWFSLFNDQAERIVGCSADELDRIRKEEGDDSYLLKLKEATWVPHLFRVSVTQNEYMNE
KRQRITVRSEAPVDHAAEAKYLLEEIAKLTAF
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atggacgctgatgcggcaccgtctgtgacgcggggcgcggtggcgttcatcctggagaac
ccgtcgccggcggccgccgacgtgccggggatcgtcctccaggtcgtcgacctcaagccc
atcggcagccgcttcactttcatggcgagcgatggcgaggccaagataaagacgatgctc
cccacccagttcttgccggaggtgcgctccggcaacctccagaatctcggcctcatccgc
gtcctcgactacacctgcaacaccatccccagccagtcggagaaggccttgattatcacc
aagtgcgaggtcgtcgccaaggcgctggattccgagatcaagagcgaggcggacgaacaa
gaggagaagaagccagcgatcgtcttgaacccaaaggaggaatccgtcgaacccgcggcg
ctctccaagcccacgaacgcgccgccgccccctgctccgatcgcgctgaagcccaagcag
gaggtgaagtccgcctctcagatcgtgtacgagcagcgcgggaatgctgctcctgcggcg
cgcttggccatgacgaggagggtgcatccattgatctccctgaacccctaccagggcaac
tgggtcatcaaggtgcgcgtcacaagcaagggcaacctgaggacgtacaggaatgctcgt
ggagaaggctgcgtcttcaacgtggagctcaccgatgaggatggcacccagatccaggcc
accatgttcaacgaggccgcaaagaagttctacccgatgtttgagctggggaaggtctac
tacatctccaagggctctctcagaatcgccaacaagcagttcaagactgtccataatgac
tacgagatgactctgaatgaaaatgctgttgtcgaggaagcggagggtgaaacatttatc
ccacagattcagtacaactttgtcaaaattgatcagctaggaccatatgtcggtggcagg
gagctagtagatgtcatcggggttgttcagagcgtatctcctactctgagcattaggaga
aagattgacaatgagacgattccaaagcgtgacatcgttgtagcagatgactcgagcaaa
actgtcacaatatctctttggaatgatcttgccaccactactggtcaggagctcttggac
atggttgactctgcgcctatcgttgcgataaagtgcatgaaagtatctgactttcaaggt
ttgtctctgtcaactgtgggtaaaagtacaattgcagtgaatcctgacttgcctgaggcc
gaaaagcttagagcttggtatgattctgaaggcaagggtacttcaatggcatcagttggt
tcggatatgggtgcatcaagggctggtggagcgagatccatgtacagtgatagagttttt
ctatctcacatcacaagtgaccccaacttggggcaggataagcccgtgttcttcagtctg
aatgcctacataagcctcatcaagcctgatcaaaccatgtggtaccgggcttgcaagacc
tgcaacaagaaggtgactgagggaattggatcaggatactggtgcgaaggctgccagaag
aatgacgctgagtgctcactgaggtacatcatggtcatcaaggtctccgaccctactggt
gaggcctggttttctttgttcaacgaccaggccgagaggatcgttggctgcagcgcagac
gagcttgatcggatcaggaaggaggagggtgatgacagctaccttctcaagctgaaggaa
gctacctgggttcctcacctgttccgcgtcagtgtcactcagaatgagtacatgaacgag
aagaggcaaaggatcactgtgagaagcgaagctccggtagaccacgcagctgaagccaag
tacctgctcgaggagatagcaaagcttactgctttctag
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integrated database retrieval system
