Opitutaceae bacterium TAV5: OPIT5_02835
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Entry
OPIT5_02835 CDS
T03683
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
obt
Opitutaceae bacterium TAV5
Pathway
obt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
obt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OPIT5_02835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obt03019
]
OPIT5_02835
Enzymes [BR:
obt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OPIT5_02835
Messenger RNA biogenesis [BR:
obt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OPIT5_02835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
AAA_19
Flavi_DEAD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AHF89356
UniProt:
W0IXV6
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All DBs
Position
537007..538626
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AA seq
539 aa
AA seq
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MLRKLIAKIRAKIAPSSPASPAKSSGGTSVSASSGSRDAAARDKGDRSRPRGERGERSGR
QPREPREPRGESREGGSRSGGRSRRGGPGGESREGRGGRRGERRERPPRDETFEHPRRDP
IKPVTPVEIPPQDTAFSKLGLNDAIAFAAAEMGYTDPTPIQAQAVPLVLEGRDVTGSAQT
GTGKTAAFALPVLHRLGAHGRLRCLVLEPTRELALQVEEAFQKYSKYTDLTTTIVYGGVG
YGKQREDLQRGVDVLAATPGRLLDHLEQGTLTLDSIEILILDEVDRMLDMGFLPDVKRIV
QQCPRERQTLFFSATLPPELAQLSSWALRDPVQIKIGQRRSPAETVSHAFYPVVASQKFD
LLIELLKRTEFKSIIIFTRTKMGADRIAHRLQREQHTVGVIHSDRSQRERVEALEGFKSG
KFEVLVATDIAARGLDIAGVSHVINYDVPENAEDYVHRIGRTGRANATGDAFTLVTEDDV
RDARSIERYIDAAIERKKLDDFDYIYSALFDENATGVAAPPKTAGRLVRGMRGGSRGRR
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atgttaagaaagctcatcgcgaagatccgcgccaagatcgcgccttcgtctccggccagc
ccggcaaaatcatccggcggcacctccgtttccgcatcctcaggctcccgcgacgccgcc
gcacgcgacaagggcgaccgttcccgtccgcgtggcgaacgcggcgagcggtccggtcgc
cagccgcgcgaaccccgcgaaccgcgcggcgaatcccgcgagggcggcagccgcagcggc
ggacgcagtcgtcgcggcggccccggcggtgaaagccgtgaaggacgcggcggccggcgc
ggcgaacgtcgcgaacgccccccgcgtgacgaaaccttcgagcatccgcgccgcgatccg
ataaagcccgtcacgcccgtcgagatcccgccgcaggacaccgcgttcagcaagctcggg
ctcaacgacgccatcgccttcgccgccgccgaaatgggttacaccgatcccacgcccatc
caggcccaggccgtgccgctcgtcctcgaaggccgcgatgtcaccggctccgcgcagacc
ggcaccggcaagaccgccgccttcgccctgcctgtcctccaccgcctcggcgcgcacgga
cgtctccgctgcctcgtcctcgaaccgacccgcgaactcgcgctccaggtcgaggaggcg
ttccagaaatactccaaatacaccgacctcaccaccaccatcgtgtacggcggtgtcgga
tacggcaaacagcgcgaggacctgcagcgcggcgtcgacgtcctcgccgccacccccggc
cgtctgctcgaccacctcgaacagggcacgctcacactcgatagcatcgaaatcctcatc
ctcgacgaggtcgaccgcatgctcgacatgggcttcctgcccgatgtgaagcgcatcgtc
cagcaatgcccgcgcgagcgccagacgcttttcttcagcgccaccctcccccccgagctc
gcccagctttcgagctgggcgctgcgcgaccccgtgcagatcaagatcggccagcgccgc
tcgcccgccgagactgtctcgcacgccttttatccggtcgtggcttcccagaaattcgac
ctgctgatcgagctcctcaagcgcaccgaattcaagagcatcatcattttcacgcgcacc
aagatgggagccgaccgcatcgcgcaccgcctccagcgcgagcagcacaccgtcggcgtg
atccactccgaccgcagccagcgcgagcgcgtcgaggcgctcgaaggcttcaagagcggc
aagttcgaggtgctcgtggccacggacatcgccgcccgcggcctcgacatcgccggcgtg
tcgcacgtgatcaactacgacgtgccggaaaacgccgaggactacgtccaccgcatcggc
cgcaccgggcgcgccaacgccaccggcgacgcgttcacgctcgtcaccgaggacgacgtg
cgcgacgcgcgttcgatcgagcgctacatcgacgccgccatcgagcgaaagaaactcgac
gatttcgactacatctattcggcgctctttgacgaaaacgccaccggcgtcgccgcacct
ccgaagaccgccggccgcctcgttcgcggcatgcgcggcggcagccgcggtcgccggtaa
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