Opitutaceae bacterium TAV5: OPIT5_02870
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Entry
OPIT5_02870 CDS
T03683
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
obt
Opitutaceae bacterium TAV5
Pathway
obt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
obt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OPIT5_02870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
obt03400
]
OPIT5_02870
Enzymes [BR:
obt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OPIT5_02870
DNA repair and recombination proteins [BR:
obt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OPIT5_02870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
RecG_dom3_C
Cas3-like_C_2
UB2H
Motif
Other DBs
NCBI-ProteinID:
AHF89362
UniProt:
W0ITF1
LinkDB
All DBs
Position
544787..548362
Genome browser
AA seq
1191 aa
AA seq
DB search
MSAPTVPPGVKHTGVCPSARGAVIAHIVRTTPAPVWLVVAPDLKLAEQLADDTAFFHALP
PLVPPFPASPPPLLPQSKIGNRESKIPPPSPPAVLVFPESLATGSGDMGEAFAASADRQT
VLSRLRALRKTAARTRPASPPLLLFTTPAGLLQSVPALEEYASHELTLSKGATVPFQELL
QKLQALDYDSEAVCESPGHYAIRGGIIDVYPVTATQPYRLDFFGDELEDIRAYDPVTQRS
DASVNEITIAASPRLKLGLSRTGLAEYLGPATQLVLVEPSLLDGKFSALPDDARARLNPL
LARCAALHGVADLDEAAALFDREDNPPAEITWDLESLRHHRRYPSDDLIAQDRLAAEEQA
RDEFFTQLGLWRDAGCTLVCALSKEGEEQRARELLGQHPAFRKRLPHFATGTATEGFLHK
SHPSPVSPPPPSPAGFGFVLVTETELFGRHRARRTTGSHRRLVQQRAQVDQLLDFSELVE
GDFVVHLQHGIAVYRGLTKIDVNEGVREVISLEFDEGVTLHVPLQESHLISRYVGLSKTR
PQLGKIGSNRWEKTRRAAEHATLDLAADLLRLQAAREAQPGHAFDPDNDWQKEFEASFPF
TETRDQLRAIEETKADMERPRPMDRLICGDVGFGKTEVAIRAAFKAVQGGRQVALLVPTT
VLAQQHLNTFRERMAGYPVVVEMISRFRTRGEVNRIVAATAAGQVDILIGTHRILNKDVS
FKNLGLVIIDEEQRFGVKHKERLKNLRATVDVLSMSATPIPRTLYMAMTGARDMSVIETA
PVNRHPIETIVKTYDDKIVVDAIRREIARGGQVFYLHNRVQTIDLVAANLARLLPDVSIG
VGHGQMDEHDLERRMTEFVAGEFQVLVCTTIIETGLDIANCNTIIIEGADRFGLSQLYQL
RGRVGRFKHQAYAWLLLHRHTRLVDVARERLNALRAHNQLGAGFRIAMRDLELRGAGNLL
GAQQSGHIVGVGFELYCQLLRQSVSRLKGEKTAARHRANVKLDFVFVGESEAGDRPLRGA
GVPPAPESGLSNPEFQIPTSASHATSYTAIKAAEAAAAGAVPVEPIQARLPHSWIGETRL
RIDFYRRLALAGTPDQLRQIEADLRDRFGEYGEPVRALLLVTEIRIRAEEKGLILVETQG
SVLKCVRAGSGPGRPGEFVQLGTRFPRLTAPRPLLRLREILTFLQNLPATT
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcacccaccgttccgccaggcgtcaaacacacgggagtctgtccgtccgcccgg
ggagccgtgatcgcgcacatcgtccgcacgacgcctgctcccgtctggctcgtcgtggcg
cccgatctcaaactcgcggagcaactcgccgacgacaccgcgtttttccacgccctgccg
ccgctcgtcccgccgtttcccgcctcccctccccccctcctcccccaatcgaaaatcggg
aatcgggaatcgaaaattccgccgccgtccccgcctgccgtcctcgttttccccgagtcc
ctcgccaccggctccggggatatgggcgaagcgttcgccgcctcggccgaccggcaaacc
gtgctctcgcgtctccgcgccctccggaaaaccgccgcgcgcacccgcccggcctctcct
cctctcctgcttttcaccacgcccgccggcctcctgcaatccgttcccgccctcgaggaa
tacgcctcgcacgaactcacgctctccaaaggcgccaccgtccccttccaggagcttctg
caaaaactccaggcgctcgactacgacagcgaagccgtctgcgaatcgcccggccactac
gccattcgcggcggcatcatcgacgtctaccccgtcaccgccacgcagccctaccggctc
gattttttcggcgacgaactcgaggacatccgcgcctacgatcccgtcacccaacgctcc
gacgcctccgtcaacgaaatcaccatcgccgcctcgccccgcctcaagctcggcctctcg
cgcaccggcctcgccgaatacctcggccccgccacgcaactcgtcctcgtcgagccctcc
ctgctcgacgggaaattcagcgccttgcccgacgacgcccgcgcccggctcaacccgctt
ctcgcccgctgcgccgccctgcacggcgtcgcggatctcgacgaggccgccgctctcttc
gaccgcgaggacaacccgccggccgaaatcacctgggacctcgaaagcctccggcatcat
cgccgctatccctccgacgacctcatcgcccaggaccgcctcgcggccgaagagcaggcg
cgcgacgaatttttcacgcagctcggcctctggcgcgacgccggctgcacactcgtctgc
gccctttcgaaggaaggcgaggagcagcgcgcccgcgaactcctcggccagcatcccgcc
ttccggaagcggctgccgcatttcgccaccggcaccgccaccgaaggttttctccacaag
tcccatccctcccctgtctcccctcctcccccctcccctgccggcttcggcttcgtcctc
gtcaccgagaccgaactcttcggccgccaccgcgcgcgccgcaccaccggctcgcatcgc
cggctcgtacagcagcgcgcccaggtggaccagttgctcgacttcagcgaactcgtcgaa
ggcgatttcgtcgtccacctccagcacggcatcgccgtctatcgcggactcacgaaaatc
gacgtcaacgaaggcgtccgcgaagtcatctcgctcgaattcgacgaaggcgtcaccctc
cacgtcccgctccaggaatcgcatctcatcagccgctatgtcggcctgagcaagacccgt
ccgcaactcggcaagatcggctccaaccgctgggaaaaaacgcgccgcgccgccgagcat
gccacgctcgacctcgccgccgacctcctccgcctccaggccgcccgcgaggcgcagccc
ggccacgccttcgaccccgacaacgactggcagaaggaattcgaggcctccttccccttc
accgaaacccgcgaccagctccgcgccatcgaggaaaccaaggccgacatggaacgcccc
cggccgatggaccgcctcatctgcggcgacgtcggtttcggcaagaccgaggtggcgatc
cgcgccgccttcaaggccgtgcagggcggccgccaggtcgccctcctcgtgccgaccacc
gtcctcgcgcaacagcacctgaacacctttcgcgagcgcatggccggctaccccgtcgtc
gtcgagatgatcagccgtttccgcacgcggggcgaagtcaaccgcatcgtcgccgccacc
gccgccggccaggtggacatcctcatcggcacccatcgcatcctcaacaaggacgtctcg
ttcaaaaatctcggcctcgtcatcatcgacgaggagcaacgcttcggcgtgaaacacaag
gagcgcctcaagaacctgcgcgccaccgtggacgtcctcagcatgagcgccacgcccatc
ccgcgcacgctctacatggccatgaccggcgcgcgcgacatgagcgtcatcgaaaccgcg
cccgtcaaccgccaccccatcgagaccatcgtcaagacctacgacgacaagatcgtcgtc
gatgccatccgccgcgaaatcgcgcgcggcggccaggttttttacctgcacaatcgcgtg
cagaccatcgacctcgtcgccgccaacctcgcccgcctgctgcccgacgtatccatcggc
gtcggacacggccagatggacgagcacgacctcgaacgccgcatgaccgagtttgtcgcg
ggcgagtttcaggtgctcgtctgcaccacgatcatcgagaccggcctcgatatcgccaac
tgcaacaccatcatcatcgaaggcgccgaccgcttcggcctctcgcaactctaccagttg
cgcggccgcgtcggccgtttcaagcaccaggcctacgcctggctcctgctccaccgccac
acgcgcctcgtcgatgtggcccgcgagcgcctcaacgccctgcgcgcgcacaaccagctc
ggcgccggtttccgcatcgccatgcgcgatctcgaactgcgcggcgccggcaacctcctc
ggcgcccagcaaagcggccacattgtcggcgtcggtttcgagctctattgccagctcctg
cgccagtccgtttcccggctcaagggcgaaaaaaccgccgcccgccaccgcgccaacgtg
aaactcgacttcgtcttcgtcggcgaaagcgaagcgggcgatcgccccctccgtggcgcg
ggcgtcccgcccgctccggaatccggactttcaaaccccgaatttcagatcccgacgtcc
gcctcccacgccacctcctacaccgcgatcaaggccgccgaagccgccgccgccggagcc
gtccccgtcgagccgatccaggcccgcctgccgcattcatggatcggcgagacgcggctg
cgcatcgacttctaccgccgcctcgccctcgccggcacgcccgaccagctccggcagatc
gaagccgacctgcgcgaccgcttcggcgagtacggcgaacccgtccgcgccctcctcctc
gtcaccgaaatccgcatccgggcagaagaaaaaggcctcatcctcgtcgaaacccagggc
tccgtgctcaaatgcgtgcgggccggcagcggtcccggccgccccggcgagttcgtccag
ctcggcacgcgctttccacgattgaccgctcccaggcccctcctacgtttgcgcgaaata
ctgacatttctgcaaaaccttcccgccaccacatga
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