Opitutaceae bacterium TAV5: OPIT5_03425
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Entry
OPIT5_03425 CDS
T03683
Name
(GenBank) 3'-5' exonuclease
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
obt
Opitutaceae bacterium TAV5
Brite
KEGG Orthology (KO) [BR:
obt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
obt03016
]
OPIT5_03425
Enzymes [BR:
obt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
OPIT5_03425
Transfer RNA biogenesis [BR:
obt03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
OPIT5_03425
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GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
AHF89459
UniProt:
W0IYD5
LinkDB
All DBs
Position
complement(682470..683597)
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AA seq
375 aa
AA seq
DB search
MLGVKIPARPPSFQLIDQPAQLAPLLAAIDRVDEVALDTEADNMYHYHTRVCLLQFLVDG
DVYLVDLMPPLPLAPLWEKLSKKHLVMHGSDFDLRLLHDLCEFRPKSLFDTMLAAQLLNR
KRIGLAALLSDHFGVTLDKGGQKANWSRRPLTAKLLDYASLDVWHLFELRDILTRELGRL
GRLEWLDQQCRRQIESGALGFPDDDEHAWRVGPVDRLRGRGLGTLHAVWHWREEWAEKLD
VPPFKVCNNDFLFRMALAAERGDAPESILATVNLGKRHGRLAPSLAAAVRAGYARDPQTL
PRRPRAERTSLSVEETARQDRFKAVRDQVAAKLELDPTLIANRSQLVQIARDPARIGEVL
LPWQAELLRPETGRA
NT seq
1128 nt
NT seq
+upstream
nt +downstream
nt
atgctcggagtaaaaattcctgcccgcccgccgtctttccagttgatcgaccagcctgcg
caactcgcgccgctccttgccgccatcgaccgcgtcgacgaggtcgccctcgataccgag
gcggacaacatgtaccactaccacacgcgggtgtgcctcctgcaatttctcgtcgacggc
gatgtctacctcgtcgacctgatgcccccgctgccgctcgcgccgctctgggaaaagctt
tcgaaaaaacacctcgtcatgcacggcagcgatttcgatctgcgcctgctgcacgacctc
tgcgagtttcgcccgaaaagcctgttcgacacgatgctggccgcccagcttctcaaccgc
aaacgcatcggtctggccgcgctcctctccgatcattttggcgtcacgctcgacaagggg
ggccagaaagccaactggtcccggcgcccgctcaccgccaagctcctcgattacgcctcg
ctcgatgtctggcaccttttcgaactgcgcgacatcctcacccgcgaactcggccggctc
ggccggctcgagtggctcgaccagcaatgccggcgccagatcgaatccggcgcgctcggt
ttcccggacgatgacgaacacgcgtggcgggtcggcccggtcgatcgcctccgcggacgc
ggcctcgggaccttgcacgccgtctggcactggcgcgaggagtgggccgaaaagctcgac
gtgccgcccttcaaggtctgcaacaacgattttctcttccgcatggcccttgccgccgaa
cgcggcgacgctcccgaatccatccttgcgaccgtcaatctcggcaaacgccacgggcgc
ctcgcgccctcgcttgccgcggcggtccgcgccggttacgcgcgcgacccgcagacactc
ccgcgccgtccgcgcgccgagcgcacctcgctgtccgtcgaggagaccgcccggcaggat
cgcttcaaggccgtccgcgaccaggtcgccgcgaaactcgaactcgatcccacgctgatc
gccaaccgctcccagctcgtgcagattgcccgcgatcctgcgcggatcggggaagtcctg
ctgccctggcaagccgagctgctccggcccgaaaccgggcgggcctga
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