Opitutaceae bacterium TAV5: OPIT5_06270
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Entry
OPIT5_06270 CDS
T03683
Name
(GenBank) RNA polymerase subunit sigma-24
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
obt
Opitutaceae bacterium TAV5
Pathway
obt02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
obt00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
OPIT5_06270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
obt03021
]
OPIT5_06270
Transcription machinery [BR:
obt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
OPIT5_06270
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r4
GerE
Sigma70_ECF
HTH_23
Sigma70_r2
HTH_40
DUF1492
HTH_10
Syndetin_C
Phage_terminase
wHTH_Par
HTH_11
Motif
Other DBs
NCBI-ProteinID:
AHF89887
LinkDB
All DBs
Position
complement(1360983..1361570)
Genome browser
AA seq
195 aa
AA seq
DB search
MKPEFSSDEELIAALRNSDEHALQLLLKRYHVTLSKFAFLILKRRDLAQEASTNVFVNIW
CRRRSLLIKTSLRSYLYSAVSNQALKLLSRQPKHEPISLEEVSPEELADTRRTDTELLFK
EFEAQIEDVLSRMPDQRRLIFRMSKIDGMLYKEIADTLNISEWTVQNHMVQANRQIAEAL
PEFRANWLNRDTEDR
NT seq
588 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccggaattctccagcgacgaagagctgatcgccgcgcttcggaacagcgacgag
cacgccttgcagcttctgctcaaaaggtatcacgtcaccctttccaagttcgccttcctc
attttgaaacggcgcgatctcgcgcaggaagcctcgaccaatgttttcgtcaacatctgg
tgccgacggcggtcgctcctcatcaagacctccctgcgcagctatctttacagtgcggtc
agcaaccaggcgctcaagctcctctcgcggcagccaaagcacgaacctatctccctggaa
gaagtctctcccgaggaactggcggacacgcgcaggaccgacaccgaactgctcttcaag
gagtttgaagcccagatcgaggacgtgctctcccggatgcccgaccagcggcggcttatc
ttccgcatgagcaaaatcgacggaatgctctacaaggagattgcggatacgctgaatatt
tccgaatggaccgtgcagaatcacatggtccaggccaaccggcagatcgccgaagctctc
cccgagttccgcgcaaactggctgaaccgggataccgaagaccggtga
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