Opitutaceae bacterium TAV5: OPIT5_13745
Help
Entry
OPIT5_13745 CDS
T03683
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
obt
Opitutaceae bacterium TAV5
Pathway
obt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
obt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OPIT5_13745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obt03019
]
OPIT5_13745
03009 Ribosome biogenesis [BR:
obt03009
]
OPIT5_13745
Enzymes [BR:
obt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OPIT5_13745
Messenger RNA biogenesis [BR:
obt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OPIT5_13745
Ribosome biogenesis [BR:
obt03009
]
Prokaryotic type
rRNA helicases
OPIT5_13745
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
AHF91113
UniProt:
W0J292
LinkDB
All DBs
Position
complement(3160590..3162398)
Genome browser
AA seq
602 aa
AA seq
DB search
MESRKFAELGLSPELLKAVDKMGFEEASPIQAAVIPLLLAGRDVVGQSSTGSGKTAAFAL
PAIERVDPKLKAVQVLILCPTRELAVQVAEEVGKLAFFKRGIIEVPVYGGQSYERQFRAL
AAGAQIVIGTPGRVMDHMERGTLKLDRLKMVILDECDRMLDMGFRDDIEHILKAMPAQRQ
SLFFSATMPREIRDMISRFIPDPAWIKIEAKEQNAPQVDQVYFEVDRRSKIEVLTRLIDL
HDFRYGIVFCSTKIMVDELDEHLHARGYACDRLHGDITQAQRTRTMEKFKRRGFEFLIAT
DVAARGLDVDDLEVVFNFDLPNDAEDYTHRIGRTGRAGRKGKAFTFVSGRELWKLQSMVR
FARLDIRRERVPSLDQVEEARENVFFEKLRSTLDAKKFRPQDRIIDRLLEQGYPSTDIIS
ALLHMMQGGDGGGPAGDASSGNARTLPGSAGDAGVKPSRKPAPSRPAEAPFSPPPPSAAA
ARSQAGAWRSRETDDDDPESSAARSPKTKYERAPRTGNQPGFTPVFFNVGRKQLVTPADI
VGKIAGVTRLPATIVGAIDIHQRHTLADVADEHVDLVVKKLAGIRIKGESLAPMRASDQP
RA
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atggaatcacgcaaatttgccgaactcgggctgtcgccggaactcctcaaggccgtcgac
aagatgggctttgaagaggcctcgcccatccaggccgccgtcatcccgctcctgctcgcc
gggcgcgatgtcgtcggccagtcctccaccgggtccggcaagaccgccgcctttgccctt
cccgccatcgaacgcgtggaccccaaactgaaagctgtccaggtgctcatcctctgcccg
acacgcgaactcgccgtacaggtcgccgaagaggtcggcaagctcgccttcttcaagcgc
ggcatcatcgaagtgcccgtctacggcggccagtcctacgaacgccagttccgcgccctt
gccgccggcgcccagattgtcatcggcacgccggggcgcgtcatggaccacatggaacgc
ggcacgctcaagctcgaccgcctgaagatggtcatcctcgacgagtgcgaccgcatgctc
gacatgggtttccgcgacgacatcgaacacatcctcaaggccatgcccgcccagaggcag
tcgctctttttctcggccaccatgccgcgcgaaatccgcgacatgatcagccgtttcatc
cccgatcccgcctggatcaaaatcgaggccaaggaacaaaacgcaccgcaggtcgaccag
gtttatttcgaggtcgaccgccgctccaagatcgaggttctcacccgtctcatcgacctg
cacgatttccgttacgggatcgttttctgctccaccaaaatcatggtcgacgaactcgac
gaacacctgcacgcccgcggctatgcctgcgaccgcctgcacggcgacatcacgcaggcc
cagcgcacccgcaccatggaaaaattcaagcggcgcggtttcgagttcctcatcgccacc
gacgtcgccgcccgcggtctcgacgtggacgacctcgaggtcgttttcaatttcgatctc
cccaacgacgccgaggactacacccaccgtatcggccgcaccggacgcgccggacgcaag
ggcaaggcgttcaccttcgtttccggccgcgaactctggaagctccagagcatggtgcgc
ttcgcccggctcgacatccgccgcgagcgcgtcccctcgctcgatcaggtcgaggaggcg
cgtgaaaacgtatttttcgagaaactgcgctccacgctcgacgcgaaaaaattccgtccg
caggaccgcatcatcgaccgcctcctcgaacagggctacccgagcaccgacatcatctcc
gcgctgctccacatgatgcagggcggcgatggcggcggcccagccggagatgcttcctcc
gggaacgccaggaccctgcccggcagtgcgggagatgccggcgtcaaaccttcgcgcaaa
ccggctccttcccgtcctgccgaagcccccttctccccccctcccccctccgccgccgct
gcccggagccaggcaggagcctggcgctcccgggaaaccgacgacgacgatccggaatcg
tccgccgcccgctccccgaagacgaaatacgaacgcgccccgcgcaccggcaaccagccc
ggtttcaccccggtgtttttcaatgtgggccgcaagcaactcgtcacgccggcggacatt
gtcgggaaaatcgccggcgtcacccggttgcccgcgaccatcgtcggcgcgatcgacatc
caccagcgtcacacgctcgccgacgtcgccgacgaacatgtcgatctcgtcgtgaaaaaa
ctcgccggcatccggatcaagggcgagtcgctcgcccccatgcgcgccagcgaccagccg
cgcgcctga
DBGET
integrated database retrieval system
