Opitutaceae bacterium TAV5: OPIT5_25455
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Entry
OPIT5_25455 CDS
T03683
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
obt
Opitutaceae bacterium TAV5
Pathway
obt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
obt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OPIT5_25455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obt03019
]
OPIT5_25455
03400 DNA repair and recombination proteins [BR:
obt03400
]
OPIT5_25455
Enzymes [BR:
obt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OPIT5_25455
Messenger RNA biogenesis [BR:
obt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OPIT5_25455
DNA repair and recombination proteins [BR:
obt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
OPIT5_25455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
Motif
Other DBs
NCBI-ProteinID:
AHF93059
UniProt:
W0J8R1
LinkDB
All DBs
Position
complement(6016877..6018739)
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AA seq
620 aa
AA seq
DB search
MSDLLNTLHTTFGYSGFRPLQREIIEASLAGRDVFALLPTGGGKSMCFQLPALHRTGLTV
VVSPLIALMKDQVDQLQAAGVAATYLNSSLTSGEARSRLAGLHRSEWRLLYVAPERLMLD
NWQENLRAWNVAALAIDEAHCISEWGHDFRPEYRQIARLREFLPEVPVMALTATATGRVR
EDIVKHLQLREPAVYVASFNRPNLSYRVLPKDQPLKQIIDFVKKREDESGIIYCATRATA
EKTAESLASRGYAARPYHAGLSADDRSANQELFLRDDVKIICATIAFGMGINKPNVRWVI
HHDLPKNIEGYYQETGRAGRDGLPADCLLLYSAGDIVKQTHFIDEITDAHEQQVARRQLR
LMSHYAEDTTCRRRTLLDYFGEAFAVDNCGACDNCQEPRETYDGTLVAQKFLSCVYRCRQ
ASRFGVGMMHITEVLTGSGSEKITKWGHDRLSTYGIGKELSRPQWMAIGRELMRLGYVAT
GGGEYPTLELTDAGAAILRSREPVTLTKLPDLPAGGRAARRTTPRRQGDIACDEILFARL
RELRKRLADERKVPAYVIFGDATLRQMAREYPATAASMEGIFGMGEKKRAEFGETFAGAI
AAFLETNPRMTFDNEAIAAT
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgacctcctcaacacccttcataccaccttcggttattccggatttcgtcccctc
cagcgcgagatcatcgaggcgtcacttgccggccgggatgtcttcgcgctcctgccgacc
ggcggcggcaagtcgatgtgtttccagctccccgcgctccatcgcaccggcctgaccgtc
gtcgtgtcacctctgatcgcgctgatgaaggaccaagtcgaccagctccaggccgccggc
gtcgccgccacctacctgaactcctcgctcacctccggtgaagcccgttcgcgcctcgcc
ggcctgcaccgcagcgaatggcggctgctctacgtcgctcccgagcgcctcatgctcgac
aactggcaggaaaacctgcgcgcttggaacgtcgccgccctcgccatcgacgaggcccac
tgcatctccgaatgggggcacgatttccgtcccgaataccggcagattgcccgtctgcgc
gagtttctgcccgaggttcccgtcatggccctgacggccaccgcaaccggccgcgtgcgc
gaggacatcgtcaagcacctccagctccgcgaacccgccgtttacgtcgcttccttcaac
cgccccaacctctcctaccgcgtcctccccaaggaccagcccctcaagcagatcatcgac
ttcgtcaaaaaacgcgaggacgagtccggcatcatctactgcgccacccgcgccaccgcc
gaaaagaccgccgagtcgctcgcctcgcgcggctacgccgcccgcccctaccacgccggc
ctctccgccgacgaccgctccgccaaccaggaactcttcctgcgtgacgacgtgaaaatc
atctgcgcgacgatcgccttcggcatgggcatcaacaaacccaacgtccgctgggtcatc
caccacgacctccccaaaaacatcgaaggctactaccaggaaaccggccgcgccggccgc
gacgggctccccgccgactgcctgctcctctacagcgccggcgacatcgtcaagcagacg
cacttcatcgacgagatcaccgacgcgcacgaacagcaggtcgcccgccgccaactccgc
ctcatgtcacactacgcggaggacaccacctgccgccgccgcacgctcctcgactatttc
ggcgaggcgtttgcggtcgacaactgtggcgcctgcgacaattgccaggaaccccgcgag
acctacgacggcaccctcgtcgcgcaaaaattcctctcctgcgtctaccgctgccgccag
gccagccgcttcggcgtcggcatgatgcacatcaccgaagtgctcaccggatcggggtcc
gaaaagatcacgaaatggggccacgatcgcctttcgacctacggcatcggcaaagagctc
tcgcgcccgcaatggatggccatcggccgcgaactcatgcgcctcggctacgtcgccacc
ggcggtggcgaatacccgacgctcgaactcaccgacgccggcgccgccatcctgcgcagc
cgtgaaccggttacgctcaccaagctccccgatctcccggccggcggccgcgctgcccgc
cgcaccacgccccgccgccagggtgacatcgcgtgcgacgagatcctcttcgcccgcctg
cgcgaactgcgcaagcgcctcgccgacgagcgcaaggttcccgcctatgtcatcttcggc
gacgccaccctccgccagatggcccgcgaatacccggccaccgccgcctccatggaaggc
attttcggcatgggcgaaaaaaagcgcgccgaattcggcgagacatttgccggggccatc
gccgcatttctcgaaaccaacccgcgcatgacattcgacaatgaagccatcgcggccaca
taa
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