Opitutaceae bacterium TAV5: OPIT5_27210
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Entry
OPIT5_27210 CDS
T03683
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
obt
Opitutaceae bacterium TAV5
Pathway
obt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
obt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OPIT5_27210 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
obt03021
]
OPIT5_27210 (rho)
03019 Messenger RNA biogenesis [BR:
obt03019
]
OPIT5_27210 (rho)
Transcription machinery [BR:
obt03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
OPIT5_27210 (rho)
Messenger RNA biogenesis [BR:
obt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
OPIT5_27210 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
AAA
AAA_22
AAA_25
Spore_III_AA
ATPase_2
S1CSD-TOTE-2
Mor
Motif
Other DBs
NCBI-ProteinID:
AHF93360
LinkDB
All DBs
Position
complement(6449690..6450943)
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AA seq
417 aa
AA seq
DB search
MALDQLYALTAKEITARATALGATFEAPPSRKLALEAFFKAAATQNLPMTDRGWLDITDK
GYGFLVHEHVNYRLYPENTYVPESLVRRYGLKRGHQIQAWVTAPGEGERCPAAVGIRSVM
GGSPEDVARVVAFEELIPYYPLRRILMEAPEIHKDISMRAVDLLTPIGFGQRGLIVAPPR
TGKTVLLHNIANSISNNYPEAKLIILLVDERPEEVTDFKRHCKGEVVSSTFDEAPESHVH
AAEMVIEKARRLVEKGGHVVILLDSITRLARAYNALASNSGKIMSGGVEATALQKPKRFF
GSARNIEGGGSLTILGTALIDTGSRMDEVIFEEFKGTGNMELHLDRGLSDKRIFPAINID
RSGTRKEELIYHPDEMQRVYGLRRAMQGIPPVEAMDMFIQRLKKTRTNAEFLLNLSR
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atcgcactcgaccagctctacgcgctcacggccaaggagatcaccgcccgggccacggcg
ctcggggccaccttcgaggctccgccctcgcgcaagctggctctggaagccttcttcaaa
gccgccgccacgcaaaatctcccgatgacggaccgcggctggctcgacatcacggacaag
ggctacggcttcctcgtccacgagcacgtcaactaccgcctctatccggaaaacacctat
gtgcccgaatcgctcgtcaggcgttacgggctcaagcgcggccaccagatccaggcctgg
gtgaccgcgcccggcgaaggcgaacgttgcccggcggccgtcggcatccgcagcgtcatg
ggcggttcgcccgaagacgtcgcccgggtcgtcgccttcgaggagctcatcccctattac
ccgctccgccgcatcctcatggaggcgcccgagatccacaaggacatctcgatgcgcgcc
gtggacctgctcacgccgatcggcttcggccagcgcggcctcatcgtggccccgccccgc
accggcaagaccgtcctcctccacaacatcgccaactccatctccaacaactacccggag
gcgaagctcatcatcctcctcgtggacgagcgtcccgaggaagtcaccgacttcaagcgg
cactgcaagggcgaggtcgtctcctcgaccttcgacgaggcgcccgaaagccacgtgcat
gccgccgagatggtcatcgaaaaggcccgccggctcgtcgaaaagggcggccacgtcgtc
atcctgctggactcgatcacccgtctcgcccgcgcctacaacgccctcgcctccaattcc
ggcaagatcatgtcgggcggcgtcgaggccaccgcgttgcagaaacccaagcgtttcttc
ggctccgcgcgcaacatcgagggcggcggctcgctcaccatcctcggcaccgcgctcatc
gacaccggttcgcgcatggacgaagtcatcttcgaggagttcaagggcaccggcaacatg
gagctccacctcgaccgcggcctctccgacaagcgcatcttcccggccatcaacatcgac
cgctccggcacccgcaaggaagagctcatctaccaccccgacgaaatgcagcgcgtgtac
ggtttgcgccgcgccatgcagggcattccgccggtcgaggcgatggacatgttcatccag
cgcctgaagaaaacccgcacaaacgctgaatttttgttgaacctgagccgttag
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