Opitutaceae bacterium TAV5: OPIT5_28160
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Entry
OPIT5_28160 CDS
T03683
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
obt
Opitutaceae bacterium TAV5
Pathway
obt03030
DNA replication
obt03430
Mismatch repair
obt03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
obt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OPIT5_28160
03430 Mismatch repair
OPIT5_28160
03440 Homologous recombination
OPIT5_28160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
obt03032
]
OPIT5_28160
03400 DNA repair and recombination proteins [BR:
obt03400
]
OPIT5_28160
Enzymes [BR:
obt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
OPIT5_28160
DNA replication proteins [BR:
obt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
OPIT5_28160
DNA repair and recombination proteins [BR:
obt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
OPIT5_28160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
HHH_3
tRNA_anti-codon
DUF655
tRNA_anti_2
T2SSK
Motif
Other DBs
NCBI-ProteinID:
AHF93499
UniProt:
W0J9Y6
LinkDB
All DBs
Position
6691310..6694951
Genome browser
AA seq
1213 aa
AA seq
DB search
MSSSSDFVHLHVHTDYSLLDGSCRVDRLMARAKELGQSAIALTDHGNMFATISFYNEAKK
AGIKPLVGCELYVAPGSRLEKAGKSEDGKNYYHLGLLARNITGYQNLLKLVSDAHLKGFY
YKPRADLETIARHADGLIGFTGCLASEVCQHLMHDRFEEARAACARYVDIFGRENYFVEL
QDHGIPEQRKIIPDLLRLAEEFHLKVVATNDVHYIRAEDANPHDALLCIQTGAKLAEENR
MKFDTQEFFLKSRDEMAKVFRELPESLTNTLAVAEMCDLSIPFPKGSERYPRYPLPPEVK
ARQTPSDYLHQLCAEGLKRRYGHDHDPVAARPVVAERLAKLKNLPPGQKPAPPDYSGLAP
DEVLVLRMGYEQAIINVTGFVDYFLVVWDFINWAKQHEIPVGPGRGSGAGCLVAYLLGIT
NIDPIRFGLLFERFLNPERVSPPDFDIDFCMRRREEVINYVRQKYGNDCVANIITYGTLG
AKMAIRDIARVHDLPYADADRLAKLIPDELGISLEDSIKKSDELRGEISRNPVSKRIIDT
ALVVEGLVRNTGKHAAGIIITDQPLDDFVPLTSQEGDVTVQFDMGAVTKLGLLKMDFLGL
KTLTVIADAVENVRRTVPGQEKFDIDAISLEDPKTYELLNAGKTVGVFQLESAGMQNAAR
QVGISTVDDINAISALYRPGPMQFIPDYARGKKDPASITYPHKLLEPVLKETFGIIVYQE
QVMECARVIAGYTLGGADMLRRAMGKKDAEAMAQERTKFVSGAKEHNNIDAKKADEIFDL
LNKFAQYGFNKSHSAAYAVVAYQTAYLKANYPVQFMAAVLTAELGNSEKVAHFIAETEAM
GITVLGPDVNESRGAFTPVGDKVRFGLAGIKGVGEIAARTIIEEREANGPFKDFDDLVNR
VDTKATNKRVLEHLAKTGAFDFSGEPRKVIFDRVDAAISAAASLARDRAAGQVGFFDLLA
DAGPAPASGSRPSAGKRKSAPADNDFTQAERLQFEKELLGFYVSGHPLNAYDGLLDAIDS
HFVRELLEQPDRTPFRLGGIAGTIAKKLSKKDNRPWAAFSLATKEATLQLNMFAGAWAET
GHNLADGAQVMICGSVMVNEEGPRLNVKSCHPLEAYVAANVKSILWLLRPEHAGVPEFLQ
QARAEMESRPGGLRMGFGFLFENRIAAVTETSAALGWRLDITRFHELRSHPAVAGVQIET
KPLELPQPSWKKR
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
gtgtcttcgtcttccgacttcgtccatctccacgttcacaccgactacagcctgctcgac
ggttcctgccgcgtggaccgtctgatggcgcgcgccaaagaactcggccagtccgccatt
gccctcaccgaccatggcaacatgtttgccaccatctcgttctacaacgaagcgaagaaa
gccggcatcaaacctctcgtcggctgcgaactctacgtcgcccccggctcccgactcgaa
aaagccggcaaatccgaagacggcaagaactactaccacctcggtctcctcgcccggaac
atcaccggctaccagaatctcctcaagctcgtctccgacgcccacctgaagggtttttac
tacaagccccgcgccgatcttgaaaccatcgcccgtcacgccgacggcctcatcggcttc
accggctgcctcgcctccgaggtctgccagcacctcatgcacgaccgcttcgaggaagcc
cgcgccgcctgcgcccgctacgtcgatatcttcggccgcgaaaactacttcgtggagctc
caggaccacggcatccccgaacaacgcaagatcatccccgacctcctccgcctcgccgaa
gaattccatctcaaggtcgtcgccaccaacgacgtccactacatccgcgccgaagacgcc
aacccccacgacgctctcctctgcatccagaccggcgccaagctcgccgaggaaaaccgc
atgaagttcgacacccaggaatttttcctcaagtcgcgcgacgagatggccaaggtcttc
cgcgaactccccgaatccctcaccaacaccctcgccgtcgccgagatgtgcgacctctcc
atccccttccccaaaggctccgaacgctacccgcgctacccgcttccgcccgaagtgaaa
gcccgccagaccccctccgactacctccaccagctctgcgccgaaggcctcaagcgccgc
tacggccacgaccacgaccccgtcgccgcccgccccgtcgtcgccgagcgcctcgccaag
ctcaaaaatctcccccccggccagaaacccgccccccccgactactccggcctcgcgccc
gacgaggtcctcgtcctgcgcatgggctacgaacaggccatcatcaacgtcaccggcttc
gtcgactacttcctcgtcgtctgggactttatcaactgggccaaacaacacgaaatcccc
gtcggccccggccgcggctccggcgccggctgcctcgtcgcctatctcctcggtatcacc
aacatcgaccccatccgcttcggcctcctcttcgaacgtttcctcaacccggaacgcgtc
tcgccccccgacttcgacatcgatttctgcatgcgccgccgcgaagaggtcatcaactac
gtgcgccagaaatacggcaacgactgcgtggccaacatcatcacctacggcaccctcggc
gccaagatggccatccgcgacatcgcccgcgtccacgacctcccctacgccgacgccgac
cgcctcgccaagctcatccccgacgaactcggcatctccctcgaagactccataaaaaaa
tccgacgaactccgcggcgaaatctcccgcaatcccgtttccaaacgcatcatcgacacc
gccctcgtcgttgaaggtctggtacgcaacaccggcaagcacgccgccggcatcatcatc
accgaccagcccctcgacgactttgtccccctcacctcgcaggaaggcgacgtcaccgtc
cagttcgacatgggcgccgtcaccaagctcggcctgctcaagatggacttcctcggcctc
aagaccctcaccgtcatcgccgacgccgtcgagaacgtccgccgcaccgtccccggccag
gagaaattcgacatcgacgccatctccctcgaagaccccaaaacctacgaactgctcaac
gccggcaaaaccgtcggtgtcttccagctcgaatctgccggcatgcagaacgccgcccgc
caggtcggcatctccaccgtcgatgacatcaacgccatctccgccctctaccgccccggc
cccatgcagttcatccccgactacgcccgcggcaagaaagaccccgcctccatcacctac
ccgcacaagctcctcgaacccgtcctcaaggaaaccttcggcatcatcgtctaccaggaa
caggtcatggagtgcgcccgcgtcatcgccggctacaccctcggcggcgccgacatgctc
cgccgcgccatgggcaaaaaagacgccgaagccatggcgcaggaacgcaccaagttcgtc
tccggcgccaaggagcacaacaacatcgacgccaaaaaagccgacgagatcttcgacctc
ctcaacaagttcgcccagtacggcttcaacaaatcccactccgccgcctacgccgtcgtc
gcctaccagactgcgtatctgaaagccaactacccggtgcagttcatggcggccgtgctc
accgccgaactcggcaattcggaaaaagtcgcgcacttcatcgccgagaccgaagccatg
ggcatcaccgtgctcggccccgacgtcaacgaatcccgcggcgccttcacccccgtcggc
gacaaggtccgcttcggcctcgccggcatcaagggcgtcggtgaaatcgccgcccggaca
atcatcgaggaacgcgaggccaatgggcccttcaaggacttcgacgacctcgtcaaccgc
gtcgacaccaaggccaccaacaagcgcgtgctcgaacacctcgccaagaccggcgccttc
gatttctccggcgagccccgcaaggtcattttcgaccgtgtcgacgccgccatctccgcc
gccgcctcgctcgcccgcgaccgtgccgccggccaggtgggcttcttcgacctcctcgcc
gacgccggccctgcccccgcctccggttcccgtccgtcagccgggaaacgcaaatccgcg
cccgcggacaacgacttcacccaggccgaacggctccagttcgaaaaagaacttctcggc
ttctacgtttccggccacccgctcaacgcctacgacggtctcctcgacgccatcgactcg
cacttcgtccgcgaactgctcgaacagcccgaccgcacgcccttccgcctcggcggcatc
gccggcaccatcgccaagaaactgtccaaaaaggacaaccgtccctgggccgccttctcg
ctcgccaccaaggaagccacgctgcaactcaacatgttcgccggcgcctgggccgagacc
ggacacaacctcgccgacggcgcgcaggtcatgatctgcggctccgtgatggtgaacgag
gaaggtccgcgcctgaacgtgaaatcctgccacccgctggaggcctacgtcgccgccaac
gtcaagtccatcctctggcttctgcgccccgagcatgccggcgtcccggagttcctgcaa
caggcgcgcgccgagatggaatcccgccccggcgggctccgcatgggtttcgggttcctt
ttcgaaaaccgcatcgccgccgtcaccgaaaccagcgccgctctcggctggcggctcgac
atcacccggttccacgaactccgcagccaccccgccgtcgccggcgtgcagatcgagaca
aaacccctcgaactcccgcagccctcctggaaaaaacgctga
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