Opitutaceae bacterium TAV5: OPIT5_30500
Help
Entry
OPIT5_30500 CDS
T03683
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
obt
Opitutaceae bacterium TAV5
Pathway
obt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
obt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OPIT5_30500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obt03019
]
OPIT5_30500
Enzymes [BR:
obt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OPIT5_30500
Messenger RNA biogenesis [BR:
obt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OPIT5_30500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AHF93856
UniProt:
W0JAM6
LinkDB
All DBs
Position
complement(7230482..7231798)
Genome browser
AA seq
438 aa
AA seq
DB search
MPFSSLGLPANLVRGVQAMGYTDPTPVQLRAIPVVLSKRDLIASAQTGTGKTAAFALPVL
AGLGAHKAAGPRVLVLEPTRELGAQVETAFRDFGRFTDIRSTIIHGGVGYGKQRSDLRAG
TDIVIATVGRLMDFLREKTLTLDHLEVLILDEVDRMLDMGFVNDVKRIVALCPKKRQTLF
FSATIPPEIEEVARFALQNPERIEIGRARTVNELVKHAIYPVAFEQKFDLLRALLDRTDY
ESVIIFSRTKHGADRIARKLKANKHSVAVLHANRSQNQRVEALDGFKKGRYEVMVATDIA
ARGIDVAGVSHVINYDVPENPEDYVHRIGRTGRAMAVGDAFMLATPEEAGDVRDIERFIG
TKIPVQKLEGFNYVDGGRPPHIDTSHPSKNPRRSGGGGGGGGQRGGSGGGGNRPSGGTGG
GGSGGPRRQRRGEWKPRK
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgccgttttccagtctcggtcttccagcaaacctcgtccgtggtgtccaggccatgggc
tacaccgatcccacgccggtgcagcttcgcgcgattcccgtcgtgctttcgaagcgcgac
ctgatcgcctcggcccagacgggcaccggcaagaccgccgccttcgcgctgcccgtcctt
gccggactcggcgcgcacaaggccgccgggccgcgcgtcctcgtgctcgagcccacccgc
gaactgggcgcgcaggtcgagacggcgttccgcgatttcggacgcttcaccgacatccgc
agcacgatcatccacggcggcgtgggttacgggaaacagcgttccgatctgcgagcgggc
accgatatcgtcatcgccacggtgggccggctcatggatttcctgcgcgagaaaaccctc
acgctcgaccacctcgaagtgctcatcctcgacgaggtggaccggatgctcgacatgggc
tttgtcaatgatgtgaaacgcatcgtggcgctgtgcccgaaaaagcggcagacgctgttt
ttctccgccacgattccgcccgagatcgaggaggtggcccggttcgccttgcagaacccg
gagcgcatcgagatcggccgcgcccgcacggtcaacgaactggtgaagcacgcgatctac
ccggtggcgttcgaacagaaattcgacctcctgcgcgcgctgctcgaccgcaccgactac
gagagcgtcatcatcttttcccgcaccaaacacggcgccgaccgcatcgcgcgcaagctg
aaggccaacaaacactccgtggccgtgctccacgccaaccgctcgcagaaccagcgcgtc
gaggcgctggacggcttcaagaaggggcgctacgaagtgatggtggccaccgacatcgcc
gcgcgcggcatcgacgtggcgggcgtgtcacacgtgatcaactacgacgtgccggaaaac
ccggaagactacgtccaccggatcggccgcaccggccgggcgatggcggtcggcgacgcc
ttcatgctggccacgccggaagaagccggcgacgtgcgcgatatcgaacgcttcatcggc
acgaaaatcccggtgcagaaactggagggtttcaattatgtcgatggcggccgcccgccg
catatcgacacgagccatccgtcgaaaaatccgcggcgcagcggtggcggcggaggaggg
ggcggccaacgcggcggcagtggcggcggcggcaaccgtccgtccggcgggacgggtggc
ggcggcagcggcggacctcgccggcaacggcggggcgaatggaaaccgcggaaatga
DBGET
integrated database retrieval system
