Afipia carboxidovorans OM5 (Mississippi): OCAR_4149
Help
Entry
OCAR_4149 CDS
T00783
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
oca
Afipia carboxidovorans OM5 (Mississippi)
Pathway
oca02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
oca00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
OCAR_4149
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oca03021
]
OCAR_4149
Transcription machinery [BR:
oca03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
OCAR_4149
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
DUF2457
SMP_MUG190-like
Motif
Other DBs
NCBI-ProteinID:
ACI91299
LinkDB
All DBs
Position
complement(155169..156332)
Genome browser
AA seq
387 aa
AA seq
DB search
METTEPSRAADQLPNPFLVTELEDNSEVRSESVERAFRTLSADSERAEGELLRSDIDRVY
LRRKLTIAECATVEQQLRALGVRIVEDDEDEDNQTEPSNSQKKKYLNEMEERELGRTIRL
AKDIQYAALEDLNQYERQLVHRAEKAKARFVESNLLYVRKLANRKRNLKHLTADDLFQEG
LMGLLKATELFDPELGFRFKTYATWWIQQYMSRALDDGDRTIRLPVHRHEYFRKIKRKTA
KLTFELGREPTLNELATELGLERERLAKLLWRLHVTECVEADAPIGEDTTVLSYKADESP
SILDLVALQQLRTMVARVLATLVPREERIIRMRFGLDGSGEQTLEAIGNVFGVTRERIRQ
IEAKALRKLKHPSRSRALRTFLESDSL
NT seq
1164 nt
NT seq
+upstream
nt +downstream
nt
ttggagactaccgaaccgtcacgagcggcagatcagcttccaaatccctttctcgttacc
gagctagaggataacagcgaggtccgtagcgagtctgttgagcgggctttccgcactttg
tccgcagatagtgaacgggcagagggtgagttattaagaagcgacattgaccgagtatat
cttcgcaggaagcttactattgcagaatgtgcaacggtagagcagcagctccgtgcgtta
ggcgttcggatcgttgaagacgatgaagacgaagacaaccaaactgaaccttccaattca
caaaagaaaaaataccttaatgagatggaagagcgtgagcttggacgaaccattcggcta
gccaaagatattcagtacgccgccttagaggatttaaatcaatacgaacgtcaattggtg
catagggccgaaaaggccaaagcaaggtttgtggaatcgaatctactttatgttcgaaag
ctcgcaaatcgaaagcggaaccttaagcacttaactgccgacgacctattccaagaaggt
ttgatgggcttgttgaaagcaaccgagctattcgacccggagcttggctttcgattcaag
acatatgccacgtggtggattcaacaatacatgagccgtgctctggacgatggcgatcga
accattcgattgcctgttcatcgtcacgagtattttaggaagataaaaagaaaaactgca
aagctaacatttgaattgggacgggagcccacccttaatgagctcgcgaccgaattaggc
ttagagagggagcggttggccaaacttctttggcggctgcacgtaacagaatgtgtcgag
gctgatgcgccgataggtgaggatacgactgtgctctcttacaaggcggacgaatcgcca
tccatattagatttggttgcccttcaacagcttcgcacaatggttgctcgtgtcctcgct
acattagtgccgcgggaagagagaattatcaggatgcgtttcgggttagatggaagcgga
gaacaaactctagaagcaatcggaaatgtttttggtgtgacccgggagcgtatacgtcag
attgaggctaaagcgctcagaaaattgaaacatccttcacggtcgcgggcccttcggaca
ttcttagagagcgactctctttaa
DBGET
integrated database retrieval system
