Afipia carboxidovorans OM5 (Mississippi): OCAR_4156
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Entry
OCAR_4156 CDS
T00783
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
oca
Afipia carboxidovorans OM5 (Mississippi)
Pathway
oca03420
Nucleotide excision repair
oca03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
oca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OCAR_4156
03430 Mismatch repair
OCAR_4156
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oca03400
]
OCAR_4156
Enzymes [BR:
oca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OCAR_4156
DNA repair and recombination proteins [BR:
oca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OCAR_4156
MMR (mismatch excision repair)
Other MMR factors
OCAR_4156
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C_2
UvrD_C
DEAD
AAA_16
nSTAND3
ResIII
AAA_22
FtsK_SpoIIIE
TIP49
AAA_11
AAA_29
RuvB_N
Motif
Other DBs
NCBI-ProteinID:
ACI91305
UniProt:
B6J9S3
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All DBs
Position
complement(162926..164629)
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AA seq
567 aa
AA seq
DB search
MKIELCEKRKAIIAQQGHLLVLGGPGSGKTTIALFKAQKRFADLKPGQEILFLSFSRAAI
RQVLLRCKEILTPAERRTVTVQTYHAFCMEMLEAHGRLLGGKPIRFLYPGDERLQKSAFE
GDWSVERRRQAAEMGLYSFDLFAAGTAELFERCGALRDLIADRFPMIIVDEFQDTDDNQW
RIVQALSGVTDVFCLADPEQRIFDYRDDIDPRRLEILRETTKVSEFDLGGENHRSPNAGI
LKFADAVLRNQAPLPATPDVKQVAYWPNAFAATAHAAVIWTFSVLRKKGVTNPSVAVLSR
SNALISDLSTILSEPHTYNNQPLPVIEHDVVWDAELSAAAALVVASILEWPTSPANESLV
RTLRLICAYYKLKNAEDPTKAAADHARKYDEAAGKVEKGEAPRINAAKALVTAHANGIDL
IGEPVADWKAARTVLQDVPALAELFREVRLVRLFRATDALASGLGEQWLALGSYAGVSDL
VKRILEQERLIAVERDPQGCVLMNMHKSKGKEFDGVVLVEGAFKSGFFNEREKPPFEPSR
RLLRVGLTRARALVTIVRPQNARPLVD
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgaagatcgaactgtgcgagaagcgcaaggcgatcatcgcacagcagggccacctgctg
gttttgggcggcccgggttccggcaagacgacgatcgcgttgttcaaggcgcagaagcgg
ttcgctgatctgaagccaggccaagagatcttgttcctgagtttctcgcgcgcggcgatc
cgccaagttctcctccgttgcaaggaaatcctgaccccagctgaacggcgcacggtgacc
gtacagacctatcacgccttctgtatggaaatgcttgaggctcacgggcggttactcggc
gggaagcctatccgcttcctctacccaggagatgagcggctgcagaagtcggcgtttgaa
ggcgactggagtgtagagcgtcggcggcaggcggctgagatgggcctctacagcttcgat
ctcttcgcggctggaacggccgagttgttcgagcggtgcggggcgttgcgcgacctcatc
gccgatcgctttccgatgatcatcgtggatgagttccaggacacggacgacaatcagtgg
cggatagtgcaggcgctttccggcgtaaccgacgttttctgccttgccgatcccgagcag
cgcatctttgactatcgcgacgatatcgacccgcgaaggctcgagattctgcgcgagacg
accaaggtctcggaattcgaccttgggggagaaaaccatcgcagtccgaacgccggcatc
ctgaagttcgcggatgcggtgctacgtaatcaagccccgttgccggcaacacccgacgtc
aaacaggtggcctactggccaaacgcgttcgccgccacagcgcatgctgctgtgatctgg
acgttctctgtgctccgcaagaagggcgtgacgaatccgagcgtagcggtgctgtcgcgt
agtaacgcgctgatttccgacctgtcgacgatcctgtccgagccgcatacctacaacaat
cagccgctcccggtcatagagcacgacgtcgtgtgggatgcagagctctccgccgccgcc
gcgcttgtcgttgcatcgatactcgaatggccgacaagcccggccaatgagagcctagtc
cggaccctccggctcatctgcgcctactacaagctgaagaacgctgaggacccaacaaag
gcagcggccgatcacgcgcgcaagtacgacgaggccgcaggaaaggtggagaagggggaa
gcgccgaggatcaatgcagccaaagcgctggtaacagcccatgccaacggcatcgatctg
atcggcgaacccgtagccgactggaaggccgctcgtaccgttctgcaggatgttcccgcg
ctggccgaactgttccgcgaggtgcggttggttcgcctcttcagggcgaccgacgcgctt
gcctctggcttgggcgagcaatggttggctttgggcagctacgccggtgtgagcgatctc
gtgaagcgcattctcgagcaagagcggctcatcgctgtggagcgcgacccccaagggtgc
gtgctgatgaatatgcacaaatccaagggcaaagaatttgacggcgtcgttctcgtcgaa
ggcgcgttcaagtccggcttcttcaacgaacgtgagaagccgcctttcgagccgagccgg
cggctgctgcgtgttggtctgacgcgcgccagggccctagtgacgatcgtacggccacaa
aacgcgcggccactggtcgactag
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