Afipia carboxidovorans OM5 (Mississippi): OCAR_4455
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Entry
OCAR_4455 CDS
T00783
Name
(GenBank) 3'-5' exonuclease
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
oca
Afipia carboxidovorans OM5 (Mississippi)
Brite
KEGG Orthology (KO) [BR:
oca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
oca03016
]
OCAR_4455
Enzymes [BR:
oca01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
OCAR_4455
Transfer RNA biogenesis [BR:
oca03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
OCAR_4455
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNase_H_2
RNase_T
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
ACI91601
UniProt:
B6JCM1
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All DBs
Position
441363..441977
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AA seq
204 aa
AA seq
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MTIRLHRGDLPDLSRYTHSVAIDTETLGLNPHRDRLCVVQLSNGDGTADVVQIPAGHTDA
PNLKKLLADPMVTKLFHFARFDIAVLEHAFGVMTQPIYCTKIASKLVRTYTDRHGLKDLV
RELLGVEISKQQQSSDWGAEKLSEAQLTYAASDVLHLHALREKLDTMLARENRMDLAKSC
FEFLPTRARLDLQGWDETDIFAHS
NT seq
615 nt
NT seq
+upstream
nt +downstream
nt
atgaccattcggctgcatcgcggcgacctgccagacctttcgcgctacacccattcggtt
gcgatcgataccgagacgctcggtctcaatccgcatcgcgaccggctatgcgtggtgcag
ctctcgaatggcgacggcaccgccgatgtcgtgcagattccggccggtcacaccgatgcg
ccgaatttgaagaagctgcttgccgaccccatggtcaccaagctgtttcatttcgcccgg
ttcgatatcgcggtgctggagcatgctttcggcgtgatgacgcagccgatctactgtacc
aagattgcttcgaagctggtgcgcacctacaccgaccgccacgggctgaaggatctggtg
cgcgagcttctgggcgtcgagatttccaagcagcagcagtcgagcgactggggtgcagaa
aagctgtcggaagcccagctcacctatgccgcctccgatgtgctgcatctgcatgcgctg
cgcgagaagctcgacaccatgctggcgcgcgagaaccgcatggacctcgccaaatcctgc
ttcgagttcctgccgacccgggcgcggctcgacctgcagggctgggacgagaccgacatc
tttgcgcattcgtaa
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