Afipia carboxidovorans OM5 (Mississippi): OCAR_4482
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Entry
OCAR_4482 CDS
T00783
Symbol
addA
Name
(GenBank) double-strand break repair helicase AddA
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
oca
Afipia carboxidovorans OM5 (Mississippi)
Brite
KEGG Orthology (KO) [BR:
oca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oca03400
]
OCAR_4482 (addA)
Enzymes [BR:
oca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OCAR_4482 (addA)
DNA repair and recombination proteins [BR:
oca03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
OCAR_4482 (addA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
UvrD_C_2
PDDEXK_1
AAA_19
DEAD
Motif
Other DBs
NCBI-ProteinID:
ACI91627
UniProt:
B6JCP7
LinkDB
All DBs
Position
complement(465875..469360)
Genome browser
AA seq
1161 aa
AA seq
DB search
MSTPRANIPDAVRDAQARASNPEASAFVAANAGSGKTHVLVTRVIRLLLADVAPEKILCI
TFTKAAAANMAQRVFETLGRWVALDDDALDAAIRHVGAPATREMRVRARKLFACALETPG
GLKVQTIHALCTRLLQQFPFEANVPAHFAVLDERDQTEMMERANLAVLLEAARAPDSALG
RALAFAMTQAADVTFKEVVHEACLSREHFMAWADGAGSIEAAMAQVCRALGVAMDAQCDA
VEREMVEGPHLPRSRWIEAANAFEDGGKTDATQGARLRAAAALTGEAQLEAYLGVFFTGE
GSERKSLMTKSLTAMHGALAAALSQEQPRLRALADRRRAIIQRDRTHALLVIASAVAAHY
RREKQARGLLDYDDLIDKTHAMLTGGYASWVHFKLDRGIDHVLIDEAQDTSPRQWDIIES
FVSEFTAGAGARGEIHRTVFAVGDEKQSIFSFQGAAPREFDLRRRAMATRHAHANLSFES
VSFKHSFRSGAAILDSVDYVFREQTIYRSIHIDDAYPVHDALPDAAPATVELWPVEEPDT
REEIEGWQAPFDTVSPASPEVKLARRVESEIKALIAAGTMTGPLGRRRRLRYGDVMILVR
RRGAAFDAVIQALKHAGIPVAGADRLKLTAHIAVIDLMHLADALLLPQDDLALAVALKSP
LFGLTDDDLLTIAPTRTGSLREALAAHAASSERLRIASEFLETCAMRAARMTPFAFFAWL
LGGDSGGHGGRARILKRLGHEANDALDEFLELALTYERKAPASLQGFIAWLRAADTDVKR
DMEILRDEVRVMTVHGAKGLEASVVFLVDTTTSPSDTQRLRLIHMPHGNAGPGEVVLWAG
AKDDDTEDVARARDTMRGEIEDEYRRLLYVAMTRAAERLIVGGCKPGNRNNVRELSWYDL
IEKGLAASPLVLTEVETPFGPAKRYARKDEAALDIARDDAASAPAELKSLPDWLYADAPQ
VRAKEITLAPSSAGGDTAAPLSAEQTILQRARLTGQWVHRLLQSLPDLAQEAREAAALRF
LARHVQDASEEERTTLIRQVLALIDDPRFAALFGPGSRAEVSIAGRLTLNGTSVRVSGQI
DRLVMTPDEVMIVDYKTGAVPQGAMPPHYVRQLALYRAVLAKLSPGRPVRCALLWTQGPQ
IVEVPPSTLDAELASLARRAF
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgagcacgccccgcgccaacattcccgatgcggtgcgtgacgcgcaggcgcgcgcctcg
aacccggaggcgtctgccttcgtcgcggccaacgcgggctccggcaagacccacgtgctg
gtcacccgggtgatccgcctcttgctcgccgatgtcgcgccggaaaagattctctgcatc
actttcaccaaggccgccgccgccaacatggcgcaacgcgtgttcgagacgcttgggcgc
tgggtcgcgctcgacgacgacgcgctcgatgccgcgatccgccatgtcggcgcgccggca
acgcgcgagatgcgtgtgcgggcgcgcaagctgttcgcctgcgcgctggaaacgccgggc
ggactgaaggtgcagaccattcacgcgctgtgcacgcggctgttgcagcagtttccgttc
gaggccaacgtgcccgcgcatttcgcggtgctcgacgagcgtgaccagaccgaaatgatg
gagcgcgccaacctcgcggtgctgctggaggccgcgcgcgcgcctgacagtgcgcttggc
cgtgcgctcgcctttgcgatgacgcaggccgccgacgtcaccttcaaggaggtggtgcac
gaggcctgcctcagccgcgagcatttcatggcgtgggcggatggtgccggcagcatcgag
gcggcgatggcgcaggtctgccgcgcgctcggcgtcgcgatggatgcgcaatgcgacgcg
gtcgagcgcgagatggtggagggtccgcatctgccgcgcagccgctggattgaggctgcg
aacgccttcgaggacggcggcaagaccgatgcgacgcaaggcgcccgcctgcgcgccgcc
gcggcgctgaccggcgaagcgcagctcgaggcctatctcggcgtgttcttcaccggcgag
ggcagcgaacgcaaatcgctgatgacgaaatcgctcaccgcgatgcacggcgcgcttgcc
gccgcgctgtcgcaggagcagccgcgtctgcgcgcgctggccgatcgccgccgcgccatc
atccagcgcgaccgcacgcatgcgctactcgtgatcgcgagcgccgtcgccgcgcattac
cggcgggagaagcaggcgcgcgggctcctggactatgacgacctgatcgacaagacccac
gcgatgctgaccggcggctatgcttcctgggtgcatttcaagctcgaccgcggcatcgat
catgtgctgatcgacgaggcgcaggacacgagtccgcggcagtgggacatcatcgagagc
ttcgtttccgaattcaccgccggtgccggcgcgcgcggcgagatccaccgcacggtattc
gcggtcggcgacgagaagcagtcgatcttctcgtttcagggtgcggcaccgcgcgagttc
gacctgcggcgacgcgcgatggcgacgcggcatgcgcacgcaaatctgtcgttcgagtcg
gtctcgttcaagcattcgttccgctccggcgcggcgattctcgattcggtcgattacgtg
tttcgcgagcagacgatctatcgttcgatccacatcgacgatgcctatccggtgcacgat
gcattgcccgacgccgcgcccgcgacggtcgagctgtggccggtcgaggagccggacacc
cgcgaggagatcgagggctggcaggcgccgttcgacaccgtctcgcccgcaagcccggaa
gtgaagctcgcacgccgcgtcgaaagcgagatcaaggcgctgattgcggccggcaccatg
accggcccgctcggccgacgccgcaggctgcgctatggcgacgtgatgattctggtgcgg
cggcgcggcgcggcgttcgatgccgtgattcaggcgctgaagcatgcgggcattccggtc
gcgggcgcggaccggctgaagctgaccgcgcacatcgcggtgatcgacctgatgcatctc
gccgatgcgctattattgccgcaggacgacctcgccctcgcggtcgcgctgaagagcccg
ctgttcggcctcaccgatgacgacctgctgacgatcgcgccgacgcgcaccggctcgctg
cgcgaggcgctggcggcgcatgcggcaagctccgagcggctgcgcatcgcgagcgagttt
ctcgaaacttgtgccatgcgcgccgcgcggatgacgccgttcgccttcttcgcatggctc
ttgggcggcgacagcggcggccatggcgggcgcgcacgcattctcaagcggctcggccat
gaggcgaacgacgcgctcgacgaattcctcgaacttgcgctcacctatgagcgcaaggcg
cccgcctcattgcagggcttcatcgcctggctgcgcgccgccgacaccgacgtgaagcgc
gacatggaaatcctgcgcgacgaagtgcgggtgatgaccgtgcacggcgcgaaaggcctc
gaggcctccgtggtgtttctggtcgataccacgacctcgccgtcggacacgcaacggctg
aggttgatccacatgccgcatggcaatgccgggcccggcgaagtggtgctgtgggcgggc
gccaaggacgacgacaccgaggatgtcgcccgcgcgcgcgacaccatgcgcggcgagatc
gaggacgaatatcgccgccttctctatgtcgcgatgacgcgcgccgccgagcgattgatc
gtgggcggctgcaagcccggcaaccgcaacaatgtgcgcgagctatcgtggtacgacctg
atcgagaaaggtcttgccgcgtcgcctctggttctcaccgaagtcgagacaccgttcggg
ccggcgaaacgctatgcccgcaaggacgaggccgcactggacattgcgcgtgatgacgcc
gcgtccgcccccgccgagctaaagtcgttgccggactggctgtatgctgatgccccgcag
gtccgcgcgaaggaaatcacgctggcgccctccagcgccggaggtgacaccgctgcgcca
ctctcggcagagcaaaccatccttcaacgtgcacggctgaccggccagtgggtacatcgc
ctgctgcaatcgctgcccgatcttgcacaggaggcacgcgaagcggcggcgctgcgcttc
ctcgcccgccatgtgcaggatgcgtccgaggaagagcgcaccacactcatccgtcaggtg
ctcgcgctgatcgacgatccgcgatttgcggcgctgttcggccccggcagccgcgccgag
gtttccatcgcgggccgcctcacgctgaacggcaccagcgtgcgcgtctccgggcagatc
gatcgcctggtgatgacgccggatgaggtgatgatcgtcgattacaagaccggcgcggtg
ccccaaggcgcgatgccgccgcattatgtgcgccagcttgcgctctatcgtgcggtgctt
gcgaaactctcgccggggcggccggtgcgctgtgcgctcctgtggacacagggcccgcag
atcgtcgaagtgccgccttcaacattggacgcagagctggcatcgctcgccaggcgagcc
ttctag
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