Afipia carboxidovorans OM5 (Mississippi): OCAR_4483
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Entry
OCAR_4483 CDS
T00783
Symbol
addB
Name
(GenBank) double-strand break repair protein AddB
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
oca
Afipia carboxidovorans OM5 (Mississippi)
Brite
KEGG Orthology (KO) [BR:
oca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oca03400
]
OCAR_4483 (addB)
Enzymes [BR:
oca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OCAR_4483 (addB)
DNA repair and recombination proteins [BR:
oca03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
OCAR_4483 (addB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
ACI91628
LinkDB
All DBs
Position
complement(469357..472557)
Genome browser
AA seq
1066 aa
AA seq
DB search
MVRSASESAMRLFNIPSSAPFLRTLLTALADGRLIEGFEARKNPERLAEATLYLPTQRAC
RMAREVFLDVMEQDAVLLPRIVALGHVDEDELAFAQDEATEFPSLNVPDALDGLPRRLVL
MRLVSAWAKRLGSRELASAPLVAGGPASTLALADDLARLIDDMTTRGVDWHALNTLVPDD
LDQYWKITLDFLKIASEAWPAHLRESELIEPVARRDLLIAAEAARMAAAPGPFIAAGSTG
SMPSTAKFLHAVAQHPQGAVVLPGLDTDLDDEAWRAIGGVRDSTGRFAEHPLSSHPQYAL
HGLLDVFGVDRKAVRALAEPSAHGRELIASEAMRPARETAQWHHRLADPDVTTRIEAGFD
NLAIVEAANPEMEALAIATAMREARQFGKTTALVTPDRALARRVMAALGRWQLPYDDSGG
DSLMDTPAGIFARLAAETVTSELAPPTLLALLKHPLLRLGAPAGGWTKATANLELAVLRG
TRPAPGCKGLQAAFAAFVEEWSKTQRKELSTLHPSEPRARLTPDDIESATRALDALVSAL
APLESVVRGTHDFATLAQRHYETITHLSRDNDGLIAAFAGTDGQQLASAFNELAPPNEND
VPAPTHIALEAADYPDLFATAFANRVVRRPENSDAALRIYGLLEARLTQCDRVILGGLVE
GVWPPAPRIDPWLSRPMRHELGLDLPERRIGLTAHDFAQLLGAKEVIITHATKVGGAPAV
ASRFLHRMKAIAGTKAWTEAEKRGADYVRYAEALDAPDSITPVAQPAPTPPVALRPLQMS
VTEIEDWLRDPYTIFAKRILKLTLLDPVDLPLTAADRGSAIHNALGDFTQKHSKTLPEDI
VAELRFCGEEHFAALMAHPEARALWWPRFLRIADWFAGWELRRRAETVEIAAEQRGEIAI
PLGDGREFRLSARADRIELRADRTFAIIDYKTGQPPSNKQVQLGLSPQLTLEAAILRGGG
FRHAFASLPANPSVSELVYVRLSGNNPAGKEQIVNLTPKGGDVQLPDDAADAALAKLTAL
IRKFDDPKQAYNSLALAMWSDRYGVYDDLARIKEWSVATHLGGGDA
NT seq
3201 nt
NT seq
+upstream
nt +downstream
nt
atggtccgctcggcgtcagaatccgccatgcgccttttcaacattccctcctccgctccg
ttcctgcgcacacttttgacggcgctcgcggacggccgcctgatcgaaggattcgaggca
cgcaaaaatcccgaacgcctggcagaagcgacgctctacctgccgacgcagcgtgcttgc
cgcatggcgcgcgaggtatttctcgacgtgatggagcaggacgccgtgctgctgccgcgg
atcgtcgcgctcggtcatgtcgacgaggacgaactcgccttcgcgcaggacgaagcgaca
gagtttccttcactcaacgtgccggatgcgctcgacggcctgccgcgccggctggtgctg
atgcggctggtcagcgcatgggcgaagcggctcggctcgcgcgaactggcctccgcgccg
ctcgtcgccggcggacccgcatcgacgcttgcgcttgccgacgacctcgcacgcctgatc
gacgacatgacgacgcgcggcgtcgattggcatgcgctcaatacgctggtgccggacgat
ctcgatcaatactggaagatcacgctcgactttctcaagatcgcaagcgaggcatggccc
gcgcatctgcgggaatccgaattgatcgaacctgtcgcgcggcgcgaccttttgattgca
gcagaggcagcgcggatggcggcagcgcccggcccgttcatcgcagcgggctcgaccggt
tcgatgccgtcgactgcgaaatttctgcacgccgtcgcgcaacatccgcaaggtgcggtg
gtgctgccgggtctcgacaccgatctcgacgatgaggcatggcgcgcgatcggtggtgtg
cgcgattccaccgggcgctttgccgaacatccgctctccagccacccgcaatatgcgtta
cacgggcttctcgatgtgttcggcgtcgatcgcaaggcggtgcgtgcgctggcagagccg
tccgctcatggtcgcgaattgattgcgtccgaggcgatgcgccccgcgcgcgaaaccgcg
cagtggcatcaccgcctcgccgatccggatgtcacaacgcgcatcgaagcggggtttgac
aatctcgccatcgtcgaggccgccaatccggagatggaggcgcttgcaatcgcaactgcg
atgcgcgaggcgcggcagttcggcaagaccacggcgcttgtgacgccggaccgtgcgctg
gcgcgccgcgtgatggccgcacttggccgctggcaattgccatacgatgattccggcggc
gactcgctgatggatacgccggccggcatttttgcgcggctcgcggcggagactgtgacg
agcgagctcgcgccaccaacattgctcgcgcttctcaagcatcctttgctgcggctcggt
gcgcctgcgggtggctggacaaaagcgaccgccaatctcgagctcgcggtgttgcgcgga
acgcggcctgcacccggctgcaagggattgcaggctgcatttgctgcattcgtcgaggaa
tggagcaagacacagcgcaaagaactctcgacgctgcatccgtccgagccgcgcgcgaga
ttgacgccggacgacatcgaatctgccacacgcgcgctcgatgcgctggtttccgcactc
gccccgctcgaaagcgtcgttcgtggcacgcatgatttcgcaacgctggcgcagcgtcat
tacgagacgatcacgcatctgtcgcgcgacaacgatggcctgatcgctgcattcgcaggc
acggacggtcagcagcttgcatctgcgttcaatgaactagcgccgccgaacgagaacgat
gtaccggcgccgactcatatcgcgcttgaggctgccgactatcccgacctgttcgcgacc
gcgtttgcaaatcgtgtcgtgcggcgcccggaaaattccgatgcagcgctgcggatctac
ggccttctcgaagcgaggctcacgcaatgcgaccgcgtcattctcggcggcttggtcgaa
ggcgtgtggccgcctgcgccgcggatcgatccatggctctcgcggccgatgcggcacgag
ctcggtctcgacctgccggaacggcgcatcggcctcaccgcgcacgacttcgcgcaactg
ctcggcgccaaagaagtcatcatcacgcatgcaaccaaggttggcggcgcgccggcggtg
gcctcgcgcttcttgcatcgcatgaaagcaatcgccggcacgaaggcgtggacggaagcc
gagaaacgcggcgcggattacgtccgctatgccgaagcactcgatgcaccggacagcatt
acacccgtcgcacaacctgcaccgacgccgccggtggcgctgcggccgctgcagatgtcg
gtgaccgagatcgaggactggctgcgcgatccctatacgatatttgccaagcgcattctg
aagctgacactgctcgatccggtggacctgccgttgacggccgccgatcggggctccgcg
atccacaacgcgctcggggatttcactcaaaaacacagcaaaactctgccggaagatatt
gtggcagaattacgtttttgcggcgaggagcacttcgcggcgctgatggcacatcccgag
gcgcgggcactgtggtggccacgctttctgcgcatcgccgactggttcgccggctgggaa
ctcaggcgccgcgccgagactgtcgagatcgccgccgagcagcgcggcgagattgcgatt
ccgctcggtgacgggcgcgagttcaggctgagcgcgcgcgccgaccgcatcgagctgcgc
gccgatcgcacctttgcaatcattgattacaagaccggccagccgccgagcaacaagcag
gtgcagcttgggctgtcgccgcagctcacattggaagcggcgatcctgcgcggtggcgga
ttccgtcacgcctttgcatcgctccctgcgaatccatcagtgagcgaactcgtttacgtc
cgcctgagcggcaataacccagcgggcaaggagcagatcgtcaatctgacaccaaagggc
ggcgatgtgcagttgcccgatgacgctgctgacgccgcgctcgccaagctcactgcgctc
atcaggaagttcgacgatccgaagcaagcctacaattcgcttgcgctggcgatgtggtcg
gatcgctacggcgtctatgacgatctcgcgcgcatcaaggaatggtcggtcgcgacgcat
ctcggcggaggcgacgcatga
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