Afipia carboxidovorans OM5 (Mississippi): OCAR_4503
Help
Entry
OCAR_4503 CDS
T00783
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
oca
Afipia carboxidovorans OM5 (Mississippi)
Pathway
oca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OCAR_4503
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oca03019
]
OCAR_4503
03016 Transfer RNA biogenesis [BR:
oca03016
]
OCAR_4503
Enzymes [BR:
oca01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
OCAR_4503
Messenger RNA biogenesis [BR:
oca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
OCAR_4503
Transfer RNA biogenesis [BR:
oca03016
]
Prokaryotic type
tRNA degradation factors
OCAR_4503
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
OB_RRP5_4th
DUF5813
Motif
Other DBs
NCBI-ProteinID:
ACI91648
UniProt:
B6JCR8
LinkDB
All DBs
Position
complement(493119..495263)
Genome browser
AA seq
714 aa
AA seq
DB search
MFNTHSVELDWGGRPLKLETGKVARQADGAVIATYGETVVMATVVSAKTPKEGIDFLPLT
VNYQEKTYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFADGYRCDTQVIVTTLSH
DMENDPDIVAMVAASAALTLSGVPFMGPVGAARVAFVNNEFILNPTLDEMVDTQLDLVVA
GTATAVLMVESEAKELPEEIMLGAVMFGHKHFQPVLKAIIELAEQAAKEPRDVVATVNAD
LEKEILGIVEQDLRKAYSIPVKQDRYAAVGAAKDKVLEHFFPEGIEPRYEKLRVLDVFKD
LEAKIVRWNILDTGRRIDGRDLKTVRPIVAEVGVLPRAHGSALFTRGETQALVVTTLGTG
EDEQYIDSLAGTYKETFLLHYNFPPFSVGETGRIGSPGRREIGHGKLAWRAIHPVLPAHH
EFPYTLRVVSEITESNGSSSMATVCGSSLALMDAGVPLKRPTAGIAMGLILEGDRFAVLS
DILGDEDHLGDMDFKVAGTEKGVTSLQMDIKIAGITEEIMKVALTQAKDGRMHILGEMAK
ALTAARAELGEHAPRIEVLQIPTDKIRDVIGTGGKVIREIVEKTGAKINIEDDGTVKVAS
ANGESIRAAIKWIKSITSEPEVGQIYDGTVVKVMEFGAFVNFFGPKDGLVHISQLAASRV
QKTSDVVKEGDKVKVKLLGLDDRGKVRLSMKAVDQTTGEDLEAKQKAENAPAAE
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacacccattccgtcgaactcgactggggcggacgcccgctcaagctcgaaacc
ggcaaagtcgcgcgtcaggccgacggcgccgtgatcgcgacctacggcgagaccgtggtg
atggcgactgtcgtctccgccaagaccccgaaggaaggcatcgacttcctgccgcttacc
gtcaactaccaggaaaagacctacgccgcgggccgcatccccggcggttacttcaagcgc
gaaggccgtccctctgagaaggaaacgctggtctcccgcctgatcgaccgtccgatccgt
ccgctgtttgctgacggttatcgctgcgacacccaggtgatcgtcaccacgctgtcgcac
gatatggagaatgatcccgatatcgtggcgatggttgccgcctcggctgcgctgacgctc
tccggcgtgccgttcatgggcccggtcggcgccgctcgcgtcgccttcgtcaacaacgag
ttcatcctcaatccgacgctcgatgagatggtcgacacccagctcgacctcgtcgttgcc
ggcaccgcgaccgcagttctgatggtggaatcggaagccaaggaattgccggaagaaatc
atgctcggcgccgtgatgttcggccacaagcacttccagccggtgctcaaggcgatcatc
gaactggccgagcaggccgccaaggagccgcgcgacgtcgtcgccaccgtcaacgccgat
ctcgagaaggaaatcctcggcatcgtcgagcaggacctgcgcaaggcctacagcattccg
gtgaagcaggatcgctacgccgctgtcggcgccgcgaaggacaaggtgctcgagcacttc
ttccccgaaggcatcgagccgcgctacgagaagctccgcgtcctcgacgtgttcaaggac
ctcgaagccaagatcgttcgctggaacatcctcgataccggccgccgcatcgacggccgc
gacctcaagaccgtgcgcccaatcgtggcggaagtcggcgtgctgccgcgcgcccacggc
tcggcgctgttcacccgcggcgagacccaggcgctggtcgtcaccacgctcggcaccggc
gaggatgaacagtacatcgactcgctcgcaggcacctacaaagagacgttcctgctgcac
tataacttcccgcccttctccgtcggtgagacgggccgcatcggttcgccgggccgccgc
gaaatcggccacggcaagctcgcctggcgcgcaatccatccggtcctgccggcgcatcac
gagtttccgtacacgctgcgcgtcgtctcggagatcaccgagtcgaacggctcctcgtcg
atggcgaccgtgtgcggctcctcgctcgcgttgatggatgccggcgtgccgctgaagcgg
ccgaccgcgggcatcgcgatgggcctgatcctcgagggcgaccgctttgcggtgctctcc
gacattctcggcgacgaggatcatctcggcgacatggacttcaaggtggctggcaccgag
aagggtgtcacctcgctgcagatggacatcaagatcgccggcatcaccgaagagatcatg
aaggtggcgctgacgcaggccaaggacggccgcatgcacattctcggcgagatggcgaag
gctctcaccgccgcgcgtgcggagctcggcgagcatgcgccgcgcatcgaggtgctgcag
atcccgaccgacaagatccgcgacgtgatcggcaccggcggcaaggtgatccgcgagatc
gtcgagaagaccggcgccaagatcaacatcgaggacgacggcaccgtgaaggttgcctcc
gccaacggtgaatcgatccgcgccgcgatcaagtggatcaagtcgatcacctcggaaccg
gaagtcggccagatctacgacggcaccgtggtcaaggtgatggagttcggcgcgttcgtg
aacttcttcggcccgaaggacggccttgttcacatcagccagcttgcggcgagccgcgtg
cagaagacctccgacgtcgtcaaggaaggcgacaaggtcaaggtcaagctgctcggcctc
gacgatcgcggcaaggtgcggttgtcgatgaaggcggtcgatcagaccaccggcgaggac
ctagaggccaagcagaaggccgagaacgcccctgccgccgagtaa
DBGET
integrated database retrieval system
