Afipia carboxidovorans OM5 (Mississippi): OCAR_5265
Help
Entry
OCAR_5265 CDS
T00783
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
oca
Afipia carboxidovorans OM5 (Mississippi)
Pathway
oca03420
Nucleotide excision repair
oca03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
oca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OCAR_5265
03430 Mismatch repair
OCAR_5265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oca03400
]
OCAR_5265
Enzymes [BR:
oca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OCAR_5265
DNA repair and recombination proteins [BR:
oca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OCAR_5265
MMR (mismatch excision repair)
Other MMR factors
OCAR_5265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
PcrA_UvrD_tudor
AAA_11
DUF3553
Motif
Other DBs
NCBI-ProteinID:
ACI92397
UniProt:
B6JB56
LinkDB
All DBs
Position
complement(1246338..1248911)
Genome browser
AA seq
857 aa
AA seq
DB search
MTEPVRRPVADVPAHQPAAGGIAARARAAAAPQYLTALNPEQREAVETLDGPVLVLAGAG
TGKTRVLTSRIAHILSEGRARPSEILSVTFTNKAAREMKQRLGVMLGQTVEGMPWLGTFH
AIAGRILRVHAELAQLKSNFTVLDVDDQIRLLKQLLQAEGIDDKRWPARMLAGLIDGWKN
RGLTPSQVPSGEAAIFGNGKGGKLYTAYQERLKILNAADFGDLLLENIRIFREHPDVLRQ
YQHRFRYILVDEYQDTNVAQYLWLRLLAQAPSPLTSPRLRGEHSRPSADVLEEGRRGEAT
ALARSASGEGQNLDISLEDSAPHPNPLPVNGERGQTPKNICCVGDDDQSIYGWRGAEVDN
ILRFDHDFPGAKVVRLERNYRSTGHILATASHLIAHNEGRLGKTLRTEDVDGEKVSVTGA
WDSEEEARSIGEEIEQFQRAGEKLNEIAILVRASFQMREFEDRFVTLGLPYRVIGGPRFY
ERAEIRDALAYLRVINSPADDLAFERIVNVPKRGLGDATVQLLHDHARKRRVPLTEAARA
IIETDELKPKPRGSLRDLLASFDRWSAQRDAIPHTELAEIVLDESGYTEMWQKDRSADAA
GRLENLKELVRSMEEFENLHGFLEHISLVMDREGGGDEDAVSVMTLHSAKGLEFDNVFLP
GWEEGLFPHQRALDEQGRAGLEEERRLAHVGITRARRRAKIYFATNRRIHGSWSTTIPSR
FLDELPAEHVEILESKGGAGWGGAGGYGASRFDNIESFGSSYSTPGWQRAQSNRGRGGGF
NESGARYGGGGRRKPLTIEGELIAKSTGTESEFAPGERVFHQKFGYGRIARVDGNKLTIA
FDKAGEKKVIDSFVTRA
NT seq
2574 nt
NT seq
+upstream
nt +downstream
nt
atgactgaacctgttcgccgacccgttgccgatgtgcctgcccaccagcctgccgctggc
ggcattgccgcgcgcgcccgtgcggcggcggctccccaatatctcacagcgctgaacccc
gagcagcgcgaggcggtcgagacgctcgatggccccgtgctggtgctcgccggcgccggc
accggcaagacccgcgttctcacctcgcgcatcgcccacatcctgagcgagggccgcgcc
cggccgtccgaaatcctgtcagtgacgtttaccaacaaggccgcgcgcgagatgaagcag
cggctcggcgtcatgctcggccagacggtggaaggcatgccgtggctcggcaccttccac
gccatcgccgggcgcatcctgcgcgtgcatgccgaactcgcgcagttgaagtcgaacttc
accgtgctcgacgtcgacgaccagatccgtcttctcaagcagcttctgcaggccgagggc
atcgacgacaagcgctggcccgcgcgcatgctcgccggcctgatcgacggctggaagaac
cgcggcctcacgccctcgcaggtgccctccggcgaagccgcgatcttcggcaacggcaaa
ggcggcaagctctataccgcctatcaggagcggctgaagattctcaacgccgccgatttc
ggcgatctccttctggagaacatccgcatcttccgcgagcaccccgacgtgctgcggcag
tatcagcatcgcttccgctatattctggtcgacgaatatcaggacaccaacgtcgcgcag
tatctctggctgcgactgctggcgcaggcgccgtcgcctctcacctcgccccgcttgcgg
ggagagcatagtcggccttcggccgacgtccttgaggaaggacgccgtggcgaagccacg
gctttggcacgaagtgcatccggtgaggggcaaaacctcgacatctcgcttgaagattcc
gcccctcaccccaaccctctccccgtaaacggggagagggggcagacgcccaaaaacatc
tgctgcgtcggcgacgacgaccagtcgatctatggctggcgcggcgcggaggtagacaac
atcctgcgcttcgatcacgactttcccggcgcgaaagtcgtgcggctcgagcgtaactat
cgctccaccggccacatcctcgccaccgcctcgcacctcatcgcccacaacgaaggccgc
ctcggcaagacgctgcgcaccgaggatgtcgacggcgaaaaggtgagcgtcaccggcgcc
tgggattcggaagaagaagcccgctcgatcggcgaggagatcgaacagtttcagcgcgcg
ggtgagaagctcaacgagatcgccattctggtgcgcgcctcgtttcagatgcgcgagttt
gaagaccgtttcgtcacgctcggcctgccctatcgcgtgatcggcggtccgcgcttctac
gaacgcgccgaaatccgcgatgcgctggcctatctgcgcgtgatcaattcgcccgccgac
gatcttgcgttcgagcgcatcgtcaacgtgccgaagcgcgggctcggcgacgccacggtg
cagcttctgcacgaccacgcccgcaagcgccgcgtgccgctgacggaagccgcgcgcgcc
attatcgagactgacgagttaaagcccaagccgcgcggcagcctgcgcgatctgcttgcc
agcttcgaccgctggagcgcgcagcgcgacgccattccgcacaccgagcttgccgaaatc
gtgctcgacgagagcggctataccgagatgtggcagaaggaccgctccgccgacgccgct
ggccggctggaaaacctgaaagagctcgtgcgctcgatggaagagttcgagaacctgcac
ggcttcctcgaacacatctcgctggtgatggaccgcgaaggcggcggcgacgaagatgcc
gtgtcggtgatgacgctgcattcggcgaagggcctcgaattcgacaacgtgttcctgccg
ggctgggaagaagggctgtttccgcatcagcgcgcgctcgacgaacagggccgcgcaggg
ctcgaggaagaacgccgcctcgcccatgtcggcatcacccgcgcacgccggcgggcgaaa
atctatttcgccaccaaccgccgcattcacggctcatggtcgacgaccattccctcgcgt
tttcttgacgaactgccggccgagcatgtcgagattctggaatccaaaggcggtgcggga
tggggcggcgcggggggttatggcgcctcgcgcttcgacaacatcgaatcgttcggctcg
agctattcgacgcccggctggcagcgcgcgcaatcgaaccgtggccgcggcggtgggttc
aacgaaagcggcgcgcgatatggtggcggcgggcgccgcaagccgctcaccatcgaaggc
gaactgatcgcgaaatcgaccggcaccgaatccgaattcgcgcccggcgagcgcgtcttc
caccagaagttcggctacggccgcatcgcacgcgtcgacggcaacaaactcaccatcgcc
ttcgacaaggctggtgagaaaaaagtgatcgacagcttcgtgacgcgggcctga
DBGET
integrated database retrieval system
