Afipia carboxidovorans OM5 (Mississippi): OCAR_5665
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Entry
OCAR_5665 CDS
T00783
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
oca
Afipia carboxidovorans OM5 (Mississippi)
Pathway
oca03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
oca00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OCAR_5665 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oca03021
]
OCAR_5665 (rpoC)
03400 DNA repair and recombination proteins [BR:
oca03400
]
OCAR_5665 (rpoC)
Enzymes [BR:
oca01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OCAR_5665 (rpoC)
Transcription machinery [BR:
oca03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OCAR_5665 (rpoC)
DNA repair and recombination proteins [BR:
oca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OCAR_5665 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
PspA_IM30
Motif
Other DBs
NCBI-ProteinID:
ACI92793
UniProt:
B6JES1
LinkDB
All DBs
Position
1604227..1608426
Genome browser
AA seq
1399 aa
AA seq
DB search
MNQEIMNLFNPTTPAQVFDQIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCSVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGLLLDMTLKDLERILYFEYYVVLEPGLTALKDRQLLSEEEYLKAQDEYGQDSFTA
MIGAEAIRELLRGLDLEKLEAQLRADMAETDSDIKHKKFAKRLKIVEAFRNSGNKPEWMI
MTVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PELKLHQCGLPKKMALELFKPFIYSRLDAKGLSTTVKQAKKLVEKERPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGQPIIVPSQDIVLGLYYLSIMREGLAGEGKVYGEMAEIEHALY
SKVIHLHTKIKYRWHGVGEDGKPVTKWYETTAGRVMLGQVLPNHPKIPFDAINKLMTKRE
ISGVIDQVYRHCGQKETVIFCDRIMALGFHNAFKAGISFGKDDMVVPQGKWKVVDDTRSM
AKEFEQQYNDGLITQGEKYNKVVDAWSKATEKIADEMMKEISSVKKTTKGNEAQINSIYM
MAHSGARGSPAQMRQLAGMRGLMAKPSGEIIETPIISNFKEGLSVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDCIINASDCGTNLGIKMRAIVDAGTVVASLGSRILGRTA
CEDIREPSTNNVIVPRGTLMEESHVDAIQRAGVQEVKIRSALTCELVNGICAMCYGRDLA
RGTPVNHGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQINEQSFVESNFDGKVTIRNRGI
ATNSEGASVAMVRNMVVAIVDADGTERVTHRVQYGARMRVDEGDTIKRGQRIAEWDPYTR
PILTEVEGTIGFEDLVEGQSISETLDESTGIAKRVVIDWRSTGRGADLRPAIVVKGKDGK
VLKLQRGGDARYMLSVDAILSVDIGSQVKPGDILARISTESAKTRDITGGLPRVAELFEA
RRPKDAAIIAETAGTIRFGRDYKNKRRISIEPTDKTEEPREYLIPKGKHIHLQDGDIVEK
GDFIVEGNPAPHDILAIKGIEELAAYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEV
TDQGDTDMISGEQVDKIEFDQNNDKAKEEGKKPATGTPVLLGITKASLQTRSFFSAASFQ
ETTRVLTEAAVNGKVDPLEGLKENVIVGRLIPAGTGASMAKIREVAMKRDKLIQDEREKQ
AAITPAAPEAEPLALPPAE
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagagattatgaatcttttcaatccgacgacgccggcccaggtcttcgaccag
atccggatttcgatcgcgtcgccggagaagattctgtcgtggtcctacggcgaaatcaaa
aagccggagacgatcaactaccgtacgttcaagccggagcgtgacggtctgttctgcgcc
cgcatcttcgggccgatcaaggactatgagtgcttgtgcggcaagtacaagcgtatgaag
tacaagggcatcatctgcgaaaagtgctcggttgaagtgacgctgtcgcgcgttcggcgc
gagcgcatgggtcacatcgagctcgcggcgccggttgcgcacatctggttcctgaagtcg
ttgccgagccgcatcggccttctgctcgacatgacgctgaaggatctcgagcgcatcctg
tacttcgaatattacgtcgtgctggagccgggcctcaccgcgctcaaggaccgtcagttg
ctctcggaagaagagtatctgaaggcgcaggacgagtacggccaggattcgttcacggcg
atgatcggtgcggaagcgatccgcgagttgctgcggggtctcgacctcgagaagctcgag
gcgcagctgcgcgccgacatggcggagacggactccgacatcaagcacaagaagttcgcc
aagcgtctgaagatcgtcgaggccttccgcaattcgggcaacaaacccgagtggatgatc
atgacggttgtgccggtgattccgccggatctgcgtccgctggtgccgctcgatggcggc
cgctttgcgacctccgacctcaacgatctgtaccgtcgcgtcatcaaccgcaacaaccgc
ttgaagcggctgatggagttgcgcgcgccggacattatcatccgtaacgaaaagcgcatg
ctgcaggaagctgtggacgcgctgttcgacaacggccgccgcggccgcgtcatcaccggc
gccaacaagcgtccgctgaagtcgctcgccgacatgctcaagggcaagcagggccgcttt
cgccagaacctcttgggcaagcgtgtcgactactccggccgttcggtcatcgtggtcggt
cccgaactgaagctgcatcagtgcggcctgccgaagaagatggcgctcgaactgttcaag
ccgttcatctattcgcggctcgacgccaaggggctgtccaccaccgtgaagcaggcgaag
aagcttgtcgagaaggagcgtcccgaggtttgggatatccttgatgaggtgatccgcgag
catccggtgctgctgaaccgcgcgccgacgctgcatcgtctcggcattcaggcgttcgag
ccgacgctgatcgagggtaaggcgatccagcttcacccgctggtctgcgccgcgttcaac
gccgacttcgacggcgaccagatggccgtgcacgttccgctgtcgctcgaagcgcagttg
gaagcgcgcgtcctgatgatgtcgaccaacaacatcctgcatccggcgaacggtcagccg
atcattgtgccgtcgcaggacatcgtgcttggtctttattatctctcgatcatgcgcgaa
ggcctcgcgggcgagggcaaggtctacggtgagatggccgagatcgagcacgcgctctac
tcgaaggtcatccacctccacaccaagatcaagtatcgctggcacggagtgggcgaggac
ggcaagccggtgacgaagtggtatgagaccacggccggccgcgtcatgcttggtcaggtt
ctgccgaaccatccgaagattccgtttgacgccatcaacaagctgatgaccaagcgcgaa
atctcgggcgtgatcgatcaggtctaccgccactgcggtcagaaggagacggtgatcttc
tgcgaccggatcatggcgctcggcttccacaacgctttcaaggcgggcatttcgttcggc
aaggacgacatggtcgtgccgcagggcaagtggaaggtggtcgacgatacccgctcgatg
gcgaaggagttcgagcagcagtacaacgacggcctgattacgcagggcgagaagtacaac
aaggtggtcgacgcctggtccaaggcgaccgagaagatcgctgacgagatgatgaaggaa
atctcgtccgtgaagaagaccaccaagggcaacgaagcgcagatcaactcgatctacatg
atggcccactccggtgcgcgtggttcgccggcgcagatgcgccagctggccggtatgcgc
ggcctgatggccaagccctcgggcgagatcatcgaaacgccgatcatctcgaacttcaag
gaaggcctgtcggttctcgaatacttcaactccacccacggcgcccgtaaaggccttgcg
gataccgcgttgaagactgcgaactcgggctatctcacccgccgtctcgtcgacgttgcg
caggactgcatcatcaatgcatccgactgcggcaccaacctcggcatcaagatgcgggcg
atcgtcgatgcgggcaccgttgtggcttcgcttggctcgcgcatcctcggccgcaccgcg
tgcgaggacattcgtgagccgtcgaccaacaacgtaatcgtcccgcgcggcacgttgatg
gaagagagccatgtcgatgcgattcagcgcgccggcgtgcaggaggtgaagatccgttcc
gcgctcacctgtgagctcgtcaacggcatctgcgccatgtgctacgggcgcgatcttgct
cgcggcaccccggtcaaccacggcgaggctgtcggcgttattgccgcgcagtcgatcggc
gagccgggcacgcagctcaccatgcgcacgttccacatcggtggtgcggcgcagatcaac
gagcagtcgttcgtggagtcgaacttcgacggcaaggtaacgatccgcaaccgcggcatc
gccaccaactcggaaggcgccagcgtcgcgatggtccgcaacatggttgttgcgatcgtc
gatgccgacggcaccgagcgcgtcacgcaccgcgtccagtacggtgcgcgcatgcgcgtc
gacgaaggcgataccatcaagcgtggccagcgcatcgcggagtgggacccctatacgcgc
ccgatcctcaccgaggtcgagggcacgattgggttcgaggaccttgtcgaaggtcagtcg
atctccgagacgctcgacgagtcgacgggtatcgccaagcgcgtggtcatcgactggcgc
tcgaccggccgtggcgcggacctgcgtccggcgatcgtggtcaagggcaaggatggcaag
gtgctgaagctgcagcgtggcggcgatgcacgctacatgctctccgtcgatgccattctg
tcggtggacatcggaagccaggtgaagccgggcgacattcttgcgcgtatctcgaccgag
agcgccaagacgcgcgacatcacgggcggtctgccgcgcgtggccgaattgttcgaggct
cgtcggccgaaggacgccgcgatcatcgcggagacggccggcaccatccgcttcggacgg
gactacaagaacaagcgccgcatctcgatcgagccgaccgacaagaccgaggagccgcgc
gagtatctgatcccgaaaggcaagcacatccatctgcaggatggcgatatcgtcgagaag
ggcgacttcattgtcgaaggcaacccggcaccgcacgatattctcgcgatcaagggcatc
gaggagcttgcggcctatctcgtcaacgagattcaggaggtttatcgcctccagggcgtg
ctcatcaacgacaagcacatcgaggtgattgtccgtcagatgctgcagaaggtggaggtc
accgaccagggtgataccgacatgatctcgggcgagcaggtcgacaagatcgagttcgac
cagaacaacgacaaggcgaaggaagagggcaagaagcccgcgaccggaaccccggtgctg
ctcggcattaccaaggcgtcgttgcagacccggtcgttcttctcggccgcctccttccag
gagacgacgcgcgtcctcaccgaagccgccgtcaacggcaaggtggacccgctcgaaggc
ctcaaggagaacgtcatcgtcggccgtctgatcccggccggtaccggcgcctcgatggcc
aagatccgcgaagtcgccatgaagcgcgacaagctgatccaggacgagcgcgaaaagcag
gcggcgattacgccggctgcgccggaagccgaaccgctggcgcttccgccggccgaataa
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