Afipia carboxidovorans OM5 (Mississippi): OCAR_5985
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Entry
OCAR_5985 CDS
T00783
Name
(GenBank) ribonuclease E (RNase E)
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
oca
Afipia carboxidovorans OM5 (Mississippi)
Pathway
oca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OCAR_5985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oca03019
]
OCAR_5985
03009 Ribosome biogenesis [BR:
oca03009
]
OCAR_5985
Enzymes [BR:
oca01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
OCAR_5985
Messenger RNA biogenesis [BR:
oca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OCAR_5985
Ribosome biogenesis [BR:
oca03009
]
Prokaryotic type
rRNA processing factors
OCAR_5985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ACI93105
LinkDB
All DBs
Position
complement(1907630..1911001)
Genome browser
AA seq
1123 aa
AA seq
DB search
MSEPSSCWVRWQTGSTSLPHDLDGPPLRCATLLRRSGPPPARSFQVSRQSDATILRDGKR
LPWIRRGASPGGLAFPSPPNQVDRSAVRPRAQRSPPRLASAVMSSEMPNKMLIDATHPEE
TRVVVVRGNRVEEFDFESAQRKQLRGNIYLAKVTRVEPSLQAAFIEYGGNRHGFLAFSEI
HPDYYQIPVADRQALIEADERAHREAEEENENRASRRRSRHRSSRRRSHGERVRSAIVED
SAPATEAPPAFPHDSTEPQPFGGYGYDDEPTDETVTPATVAPSVVPSAPGRPLPSIEGND
YGDQADEGIDDPTFDYPETVDDAPATAEDHHDDHGHDDHGHDDAHDHDHNDDHDHDDDNG
EHAGETHEEHADAEHASEDAASDSDEDDDSDGEEDEQVESVGGDDALEEVPERTFRPRRQ
YKIQEVIKRRQVMLVQVVKEERGNKGAALTTYLSLAGRYAVLMPNTARGGGISRKITSAQ
DRNRLKDVVQDLDVPEGMGIILRTAGASRTKPEIKRDFEYLIRMWETVRDLTLKSQAPTL
VYEEGSLIKRSLRDLYNKEIDEVLVSGEEGYHEARDFMKMLMPSNVRAVKLYRDNQPLFS
RMGVESQLDAMFSPVVTLRSGGYLVINQTEALVSIDVNSGRSTREHHIEDTALKTNLEAA
EEVARQLRLRDLAGLIVIDFIDMDEKRNNRAVERKLSDCLRQDRARIQVGRISHFGLLEM
SRQRIRASVLESSTEPCPTCGGIGHVRSVASVALQLLRSLEEQLMKSGTHNYTVRTRTDV
ALYVLNHKRGHLRDLEEAFQVTLAVIADPTVGGQQAFVIERGEQVHTVEAAKALLAARVA
AQPVEVEEFDAEEEFFEEETETESAENGDTETADAQGENEDGNRRRRRRRRGRGRGEGRE
ASAQSAEGEASTGEDTQAEASEDGEEDSEAASARGEENGERRPRRRGRRGGRRRRGNGNG
NGDEATATAGEADTEAGEASADEGTPHNLSMPSFDAPQPDISVPIATENESTPAPAATAP
TAAAPEADAPAHEEDKAPRRSTVREKVSFFFGEPPVADTAPATEAAPAAAATEEQAAAPA
PVETTPSESASNELASSNEMPPAEPEPAPSAPRRRGWWSRRSE
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
ttgagtgaacccagctcctgctgggtccgttggcagacaggcagcacgtcgctgccgcat
gatttagacgggccgccgcttagatgcgccacactgttacgccgatccggacctcctcca
gcgaggtccttccaggtctcccgacaatccgacgcgacgatcttgcgcgacggaaaacgt
ctgccctggattcggcgcggggcatcgccaggcggtttggccttcccctcacccccgaat
caggtggaccgttctgccgtccggccgcgcgcccagcgctcgccgccacgcctggcgtcc
gccgtcatgagttccgaaatgccgaacaaaatgttgatcgacgccacccacccggaggag
acccgggtcgttgtggtccgcggcaaccgcgtcgaagagtttgatttcgaatccgcgcaa
cgcaagcagcttcgcggcaacatctatctcgccaaggtcacgcgcgtggagccttcgctc
caggccgcgttcatcgagtacggtggcaatcgccacgggttcctcgccttcagcgaaatc
catcccgactactaccagatccccgtcgccgaccggcaggcgttgatcgaggccgacgag
cgcgcgcaccgcgaggccgaggaagaaaacgaaaaccgcgccagccgccgccgctcgcgc
caccgcagctcgcgccgccgcagccatggcgagcgcgtgcgcagcgccatcgttgaggac
agcgcgcccgcgaccgaggcgccgccggcgttcccgcacgattccaccgagccgcagccg
ttcggcggctacggctacgacgacgagcccaccgacgagacggtgacgcccgcgaccgtt
gcgccctccgtggtgccgagcgcaccgggccgccccctgccctcgatcgagggcaatgat
tacggcgatcaggccgacgaaggcatcgacgatcccaccttcgactatccggagacggtc
gacgacgcgcctgcgacggcggaagaccatcacgacgatcacggtcatgacgatcatggt
catgacgacgcgcatgaccacgaccacaacgacgatcatgatcacgatgacgacaatggc
gagcacgccggtgagacccatgaggagcacgccgacgccgagcacgccagcgaggatgcg
gcctccgacagcgacgaggacgacgacagcgacggcgaggaagacgagcaggtcgaatcc
gtcggtggcgacgatgcgcttgaggaagtgccggagcgcaccttccgcccgcgccgccag
tacaagattcaggaagtcatcaagcgccgccaggtgatgctggtgcaggtcgtcaaggaa
gagcgcggcaacaagggcgcggcgctcacgacctatctttcgctcgccggccgctatgcc
gtgttgatgccgaacaccgcgcgtggcggcggcatcagccgcaagatcacctcggcgcag
gaccgcaaccgcctcaaggacgtggtgcaggacctcgacgtgccggaaggcatgggcatc
atcctgcgcacggcaggcgcctcgcgcaccaagccggaaatcaagcgcgacttcgaatac
ctcatccgcatgtgggagacggtgcgcgacctcacgctgaagtcgcaggcccccaccctc
gtctacgaggaaggctcgctcatcaagcgctcgctgcgcgatctctacaacaaggagatc
gacgaagttctggtgtccggcgaagagggctaccatgaagcgcgcgacttcatgaagatg
ctgatgccttccaacgtgcgggcggtgaagctctatcgcgacaaccagccgctgttctcg
cgcatgggcgtcgagagccagttggacgcgatgttctcgccggtcgtaacactgcgctcc
ggcggctacctcgtcatcaatcagaccgaagcgttggtttcgatcgacgtcaactccggc
cgctcgacgcgtgagcatcacatcgaggacaccgcgctcaagaccaatctcgaagccgcc
gaggaagtcgcgcggcagttgcggctgcgcgatctcgcgggcctcatcgtcatcgacttc
atcgacatggacgagaagcgcaacaaccgcgcggtcgaacgcaagctctccgactgcttg
cggcaggatcgcgcccgcatccaggtcggccgcatctcgcatttcggccttctggaaatg
tcgcgccagcgcatccgcgccagcgtgctggaaagctcgaccgagccctgcccgacctgt
ggcggcatcggccacgtccgctccgtcgcttcggtcgcgctgcaattgctgcgcagcctc
gaagagcaactgatgaagagcggcacgcacaattacacggtgcgcacccgcaccgacgtc
gcgctctacgttctgaaccacaagcgcggccacctgcgcgacctcgaggaagccttccag
gtcacgctcgcggtgatcgccgatccgaccgtgggcggccagcaggcattcgtcatcgag
cgcggcgagcaggtccacaccgtcgaagccgccaaggcacttctggccgcgcgcgttgcc
gcgcagcccgtcgaggtcgaggagttcgacgccgaggaagagttcttcgaggaagagact
gaaaccgaaagcgccgagaacggcgacaccgagacggctgatgctcagggcgaaaacgag
gacggcaatcgccgccggcgtcgtcgccgtcgtggccgcggacgtggtgaaggccgcgag
gcatccgcgcagtccgccgagggcgaagcatccaccggcgaggatacgcaggctgaggcc
agcgaagatggcgaggaggattccgaagccgcttccgcgcgcggcgaggagaatggcgag
cgccgtccgcgccgccgtggccgccgtggtggtcgccgccgtcgtggcaatggaaacggc
aatggtgacgaggcgactgctaccgcaggcgaggcagatacagaggccggtgaagcatcc
gcagacgaaggcacgccgcacaatctcagcatgccgtccttcgatgcgccgcagcccgac
atctccgtgccgatcgcaacggaaaacgaaagcacgcccgcaccggcagccaccgcgccg
acagccgccgcaccggaggctgacgcccccgcgcatgaggaagacaaggccccgcgccgc
tccaccgtgcgcgagaaggtgagcttcttcttcggcgagccgcccgtagccgacaccgca
cctgcaacggaggctgctccggctgctgccgcaactgaagaacaggctgcagcgcctgcg
ccggttgagactacgccgagcgagtccgcatcaaacgagctagcctcaagcaacgagatg
ccgcctgccgagccggagcccgctccctccgcgccgcgccgtaggggctggtggtcacgc
cggtcggaataa
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