Afipia carboxidovorans OM5 (Mississippi): OCAR_6128
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Entry
OCAR_6128 CDS
T00783
Name
(GenBank) penicillin-binding protein 6
KO
K07258
serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:
3.4.16.4
]
Organism
oca
Afipia carboxidovorans OM5 (Mississippi)
Pathway
oca00550
Peptidoglycan biosynthesis
oca01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
oca00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
OCAR_6128
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
oca01002
]
OCAR_6128
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
oca01011
]
OCAR_6128
Enzymes [BR:
oca01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
OCAR_6128
Peptidases and inhibitors [BR:
oca01002
]
Serine peptidases
Family S11: D-Ala-D-Ala carboxypeptidase A family
OCAR_6128
Peptidoglycan biosynthesis and degradation proteins [BR:
oca01011
]
Peptidoglycan biosynthesis and degradation
DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
OCAR_6128
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Peptidase_S11
PBP5_C
Beta-lactamase2
DUF6905
Peptidase_S13
DUF6204
Motif
Other DBs
NCBI-ProteinID:
ACI93243
LinkDB
All DBs
Position
complement(2075472..2076749)
Genome browser
AA seq
425 aa
AA seq
DB search
MDPDMALRTETTGITGQMPHVAAWLGRVCAGLLVAAGLIVAPVYAANHSVQGAVKKEEGG
IDTDAPTAILIEAKTGSVLFEKNADELRAPSSMMKLMTAEVIFHALAKGEIKLTDEYRIS
ENAWRRGGAPSGGSTMFAAIHSIVSVDDLLHGLAIQSGNDSCIALAEGYAGSESAFVAKM
QARAREIGLARSTFGNTNGLPDPDNKMSVRELGHLARHLILTYPDLYKLFGEREFTWNKI
RQQNRNPLLASLDGADGLKTGYTKEGGFGMVGSAVQNGTRLVVVVNGLSDAADRAAAAKR
LLEWGFKNFETRTLFEANQTVGYGKVFGGDTGRIALHANEPVGVMVQRNGSDKINARIIY
KGPVRAPVQSGDRIGAIKVWRNGNLALEVPLYASESVGTGSLTQRAFDGASELAIGLLRS
GIEKL
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggatccggacatggcgctgcgaaccgaaaccacgggaatcacaggacaaatgccgcat
gtcgcggcgtggctcggccgcgtttgcgcagggctactggtggctgccggtctcattgtc
gcgccggtttacgctgccaatcacagcgttcagggcgcggtgaagaaggaagagggcggc
atcgacaccgatgcgccgaccgcgatcctcatcgaggccaagaccggcagcgtcctgttc
gagaagaatgccgacgagctgcgtgcgccatcgagcatgatgaagctgatgaccgcggag
gtcatcttccacgcgctcgccaagggcgagatcaagctgacggacgaataccggatcagc
gagaacgcctggcgccgcggcggtgcaccgtccggcggctcgaccatgttcgcggcgatc
cacagcatcgtcagcgtcgacgatctgctgcatggccttgcgatccagagcggcaacgat
tcctgcatcgcgcttgcggaaggctatgccggtagcgaaagcgcgttcgtcgcgaagatg
caggcgcgcgcccgcgagatcggccttgcgcgctcgaccttcggcaacaccaacggcctg
ccggacccggataacaagatgtcggtgcgcgaactcggccatctcgcgcggcatctgatc
ctgacctatccggatctttacaagctgttcggcgagcgcgaattcacctggaacaagatc
cgccagcagaaccgcaatccgctgctggcctcgctcgatggcgccgacggcctcaagacc
ggctacaccaaggagggcggcttcggcatggtcggctcggcggtgcagaacggcacgcgc
ctcgttgtggtcgttaacgggcttagcgacgcggcagatcgtgcggccgccgccaagcgg
ctgctggagtggggcttcaagaatttcgagacccgcacgctgttcgaggcgaaccagacc
gtcggctacggcaaggtgttcggcggcgacaccggccgtatcgcgctgcatgcgaacgag
ccggtcggcgtgatggtgcagcggaacggctccgacaagatcaatgcgcggatcatctac
aagggccccgtacgtgcgccggtgcagagcggcgaccggatcggcgcgatcaaggtctgg
cgcaacggcaacctcgcgctggaagtgccgctctatgccagcgagtccgtcggcaccggc
tcgctcacgcaacgcgcgttcgacggcgcgagcgaacttgcgatcggcctgctgcgttca
ggcatcgagaagctctag
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