Afipia carboxidovorans OM5 (Mississippi): OCAR_6210
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Entry
OCAR_6210 CDS
T00783
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
oca
Afipia carboxidovorans OM5 (Mississippi)
Pathway
oca03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
oca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OCAR_6210 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oca03400
]
OCAR_6210 (mfd)
Enzymes [BR:
oca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OCAR_6210 (mfd)
DNA repair and recombination proteins [BR:
oca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OCAR_6210 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
Cas3-like_C_2
RecG_dom3_C
SecA_DEAD
AAA_16
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ACI93324
UniProt:
B6JFA5
LinkDB
All DBs
Position
complement(2152275..2155790)
Genome browser
AA seq
1171 aa
AA seq
DB search
MKSPVQSPAALLTPGRAITLANTAEGAEGLIVADLARAVAARKEAPPVSLAVLCRHTARM
AQLTRALEFFAPDVAVMQFPAWDCQPYDRVSPHGGILAQRLTTLARLSRLRGGDKPLVVL
TSVNAIVQRVPSRDAMAAQALSVAPGHRVPMDSITAWLEHNGYSRTSTVREPGEYAVRGG
ILDLFPAGLDQPVRFDFFGDTLESIRTFDAETQRTLLDMRALDLVPVSEFQLTTETIRRF
RMGYVAQFGAPDRDDQLYEAVSEGRRHPGMEHWQPLFTERMDTLFDYLGGTPFAIEAQAE
DAVRERFSQINDYYEARREAMEQPGGGAIYKPLPPDKLYLSENEWSERLTTQPLARMTPF
AMPEGEGVIDVGAKAGRDFAPERADTSVNVFAAVVSHVNQLHAARKKVVVALWSEGSRER
MASMLKDHKLVPLTNVNTWRMVQATPRNETMLAVLGLDSGFETDGVALITEQDILGDRLV
RARKASRKVENFISEVTSLATGDLVVHVEHGIGRYIGLQTLEVSGAPHDCLELHYANNAK
LYLPVENIELLSRYGAEGAGVELDRLGGGGWQARKAKLKNRIREIAGDLIKIAAERQLHE
APKFPLHQGLYDEFCARFPHDETEDQLTAINASLDDLNAGKPMDRLICGDVGFGKTEVAL
RAAFAVAMEGRQVAVVVPTTLLARQHAKNFTDRFRGFPVKIAQASRLVSAKELRETKKGL
AEGNIDIVVGTHALLGKTIKFKNLGLIIVDEEQHFGVSHKERLKQLRAEVHVLTLSATPI
PRTLQLALTGVRDLSIIASPPVDRLAVRTFVAPFDPLMIREALLRERYRGGQAFYVCPRI
EDLAEAKDFLDKNVPEMKVAVAHGQMAPGVIEDIMSAFYDGKFDILLSTTIVESGLDIPN
ANTLIVHRADMFGLAQLYQLRGRVGRSKLRAYALFTLPAQRKITAQAERRLKVLQSLENL
GAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEEILNLKAGVSAPAEDRWS
PQIMLGMPVLIPEDYVSDLAVRLSLYRRLADFETDEEIADFGAEMRDRFGPLPDEVRFLF
KLASIKNYCRRANIEKLDAGPKGASISFRDNKFAEPERLVYFIRQYGQAAKVRPDMKVVF
LQDWDTPEARMEGVTDILHQLADLAEGRKAA
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgaagtcgcccgtccaatcgccggccgcgctgctgacgcccggccgcgccatcacgctc
gccaacaccgcggaaggtgcggaggggctgatcgtcgctgatctcgcccgtgcggttgcc
gcgcggaaggaagcgccgcccgtcagtcttgcggtgctgtgccgccataccgcgcggatg
gcgcagctgacccgtgcgctcgaattcttcgcgcccgatgtggcggtgatgcagtttccc
gcgtgggactgccaaccttatgaccgcgtctcgccgcatggcgggattctcgcgcagcgg
ctgaccacgctcgcacgtctttctcgccttagaggcggggacaagccgctcgtggtgctg
accagcgtcaacgccatcgtgcagcgcgtgccctcgcgcgacgccatggcggcgcaggca
ctctcggttgcacccggacaccgcgtgccgatggactccattacggcctggctcgagcac
aatggctacagccgcacctcgacggtgcgtgagccgggcgagtatgccgtgcgtggcggc
attctggacctttttccggcgggcctcgaccagccggtgcggtttgatttcttcggcgac
acgctggagtcgatccgcaccttcgatgccgagacgcagcgcacgctgctcgacatgcgt
gcgctcgatcttgtgccggtgtcggaattccagttgacgaccgaaaccatccgccgcttc
cggatgggttacgttgcgcagttcggggcaccggaccgcgacgatcagctttacgaagcg
gtcagcgaaggccgccgccatcccggcatggagcattggcagccgctgttcaccgagcgg
atggatacgctgttcgactatctcgggggcacgccgtttgcaatcgaggcgcaggctgaa
gatgccgtgcgcgaacgcttctcccagatcaatgactattacgaagcccggcgcgaggcg
atggagcaacccggtggcggcgcgatctacaagcctctgccgcccgacaagctctatctg
tccgagaacgaatggagcgagcggctcaccacgcaaccgcttgcgcgcatgacgccgttc
gcgatgccggaaggtgagggcgttatcgacgtcggagcaaaggccggtcgcgattttgct
cccgagcgcgccgacacgtctgtcaatgtgtttgcggccgtggtttcccacgtcaatcag
ttgcacgctgcgcgcaagaaggtcgtggtggcgctgtggagcgaaggctcgcgcgagcgc
atggcgagcatgctgaaggaccacaagctggtcccgctcaccaacgtcaatacctggcgg
atggtgcaggcgacgccccgcaacgaaacgatgctcgcggtgctcggcctcgactccgga
tttgagaccgacggcgtcgcgctcatcaccgagcaggacattctcggcgaccgcttggtc
cgtgcgcgcaaggcgagccgcaaggtcgagaacttcatttccgaggtcacgtcgcttgcg
accggcgatctcgttgtccacgtcgagcacggcatcggccgttacatcggcctgcagacg
cttgaagtctccggagcgccgcacgattgcctcgaactgcactacgccaacaacgcgaag
ctttatctgccggtcgagaacatcgagctgttgtcgcgctacggcgcggaaggtgccggc
gtcgaactcgacaggctcggtggcggcggttggcaggcacgcaaggcgaagctcaagaac
cgcattcgtgagattgcgggcgacctcatcaaaatcgcggccgaacggcaattgcacgag
gcgccgaaatttccgctgcatcagggactttacgacgaattctgcgcacgcttcccgcat
gacgagacggaggaccagctcaccgcgatcaatgcttcgctcgatgatctcaatgccggc
aagccgatggatcgcctgatctgcggcgacgtcggtttcggcaagaccgaagtggcgttg
cgcgcggcttttgctgttgcgatggaaggtcgtcaggtcgccgtggtggtgccgacgacg
ctgcttgcgcgccagcatgcgaagaacttcaccgaccgatttcgaggtttcccggtcaag
atcgcgcaagcctcgcgcctcgtcagcgccaaggagttgcgcgagaccaagaaggggctt
gcagaaggaaatatcgacatcgtcgtcggtacccacgcgcttctcggcaaaaccatcaag
ttcaagaatcttggcctcatcatcgtcgatgaggagcagcatttcggcgtgtcgcataag
gagcggctgaagcagttgcgcgccgaggtgcatgtgctgacgctgtcggcaacgccgatc
ccgcggacgctgcaactggcactgaccggtgtgcgcgatctttcgatcatcgcttcgcca
ccggttgaccgtctcgcggtgcgcaccttcgttgcgccattcgatccgctgatgatccgt
gaggcgctgttgcgcgagcgttatcgcggtggtcaggcgttctatgtctgtccgcgtatc
gaggacctcgcggaagccaaggacttcctcgacaagaacgtgccggaaatgaaggtcgca
gtcgcgcatggtcagatggcgccgggtgtcatcgaggacatcatgtccgcgttctacgac
ggcaagttcgacattctgctctcgaccaccatcgtagaatccggcctcgacattccgaac
gccaacaccctgattgtgcatcgtgccgatatgttcggcctcgcgcagctttatcagctg
cggggccgtgtcgggcgctcgaagctgcgggcctatgcgctgttcacgctgcctgcgcag
cgcaagatcacggcgcaggcggagcggcggttgaaggtgctgcagtcgctggaaaacctt
ggtgccggattccagttggcttcgcacgatctcgacattcgtggggcaggcaatcttctc
ggcgaagagcagtcaggtcacatcaaggaagttggcttcgagctctaccagcagatgctg
gaggaggagattctcaatctcaaggccggcgtgtccgcacctgcggaagatcgctggtcg
ccgcagatcatgctcggcatgccggtgcttattcccgaagactatgtgtccgaccttgcg
gtgcggctgtcgctctatcgccgtctggcggatttcgaaaccgacgaggagatcgccgat
ttcggcgcggagatgcgcgatcgttttggcccgctgccggacgaagtgcgcttcctcttc
aagcttgcatcgatcaagaactactgtcgtcgcgccaacatcgagaaactcgatgccgga
ccgaagggagcttcgatcagcttccgcgacaacaagttcgccgagcccgagcggcttgtc
tatttcatccggcaatatgggcaggcggcaaaggtgcggcccgacatgaaggtggtattc
ctgcaggattgggatacgccggaggcgcgcatggaaggtgtgacggatatcctgcatcaa
ctcgccgaccttgcggaaggccgcaaggcagcgtga
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