Afipia carboxidovorans OM5 (Mississippi): OCAR_6238
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Entry
OCAR_6238 CDS
T00783
Symbol
uvrA
Name
(GenBank) excinuclease ABC, A subunit
KO
K03701
excinuclease ABC subunit A
Organism
oca
Afipia carboxidovorans OM5 (Mississippi)
Pathway
oca03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
oca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OCAR_6238 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oca03400
]
OCAR_6238 (uvrA)
DNA repair and recombination proteins [BR:
oca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OCAR_6238 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
OCAR_6238 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_29
AAA_16
RsgA_GTPase
DnaJ_CXXCXGXG
nSTAND1
AAA_21
AAA_23
BCA_ABC_TP_C
DUF6932
Motif
Other DBs
NCBI-ProteinID:
ACI93351
UniProt:
B6JFD2
LinkDB
All DBs
Position
2184081..2187059
Genome browser
AA seq
992 aa
AA seq
DB search
MDEVIKAKQRAQTSASRAITIRGAREHNLKNVDLEVPRDKLVVFTGLSGSGKSSLAFDTI
YAEGQRRYVESLSAYARQFLEMMQKPDVDQIDGLSPAISIEQKTTSKNPRSTVGTVTEIY
DYMRLLWARVGVPYSPATGLPIESQTVSQMVDRVLALPEGTRLYLLAPVVRGRKGEYRKE
LAEYLKKGFQRVKIDGAFHELADAPTLDKKFPHDIDVVVDRIVVRPDIAQRLAESFETAL
KLAEGLAVVEFADAPATPAADTKKSEKKTAKIHDKSGPERLLFSEKFACPVSGFTLPEIE
PRLFSFNNPYGACPECGGLGVEQHIDPDLIIPDKDLSLRKGAIAPWAKSSSPYYIQTLQA
LGKFYKFTLDTKWKDLPKKTQTALLYGSGEDAIKFSYEDGTRSYDTKKPFEGIVTNIERR
FAETESEWAREELGKYFADVPCAGCHGYRLKPEALCVKVGGKHIGEISELSVKKAGEWFE
TVPDLLTTQQNEIAVRILKEIRERLSFLLDVGLNYLTLSRASGTLSGGESQRIRLASQIG
SGLTGVLYVLDEPSIGLHQRDNARLLDTLKRLRDLGNTVIVVEHDEDAIRLADHVVDVGP
GAGIHGGHIVARGTPDDVMKNPKSLTGKYLTGEKFVPIPERRPPNHRRTMKVINARGNNL
KNISAEIPLGLFTCVTGVSGGGKSTLLIDTLYKAIARKLNGAADAPAPHDRIEGLEHIDK
IIDIDQSPIGRTPRSNPATYTGAFTPIREWFAGLPEAKARGYEPGRFSFNVKGGRCEACQ
GDGVIKIEMHFLPDVYVTCDTCKGKRYNRETLEVTFKSKTIADVLDMTVDEAEDFFKAVP
RIRETFRTLQRVGLGYIRVGQQATTLSGGEAQRVKLAKELSKRATGRTLYILDEPTTGLH
FHDVAKLLEVLHELVAQGNTVVVIEHNLEVIKTADWVIDLGPEGGDGGGEIVAWGPPEDI
VQAPRSYTGKFLAPVLAKGQSGHLATSEEAAE
NT seq
2979 nt
NT seq
+upstream
nt +downstream
nt
atggacgaagtcatcaaggccaagcaacgcgcccagacgagcgcctcgcgtgccatcacc
attcgcggtgcgcgcgaacacaatctcaagaacgtcgatctcgaagtgccgcgcgacaaa
ctcgtggtgttcacgggcctctcgggttccggtaagtcctcgctcgcgtttgacacgatc
tatgccgaaggccagcgccgctacgtcgaatcgctgtcggcctatgcgcggcaattcctc
gagatgatgcagaagccggacgtcgatcagatcgacggcctgtcgccggcgatctcgatc
gagcagaagaccacctcgaagaacccgcgctcgacggtgggcaccgtcaccgaaatctac
gactatatgcgcctgctgtgggcgcgcgtgggcgtgccctattcgcccgcgacgggactg
ccgatcgagagccagaccgtttcgcagatggtcgatcgcgtactggcgctgccggaaggc
acgcggctctatctgctcgcgccggtcgtgcgcggccgcaagggtgagtaccgcaaggaa
ctggccgagtatctcaagaagggttttcagcgcgtcaagatcgacggtgcattccatgag
cttgccgatgcacctacgctcgacaagaaatttccgcacgatatcgacgtcgtcgtcgac
cgcatcgtggtccgacccgacatcgcacagcggcttgcagaaagtttcgagaccgcactg
aagcttgccgaaggcctcgctgtcgtcgagtttgccgatgcgcctgcgacgccggctgcc
gacaccaaaaagtccgaaaagaagaccgcaaaaatccacgacaagagcggtcccgaacgg
ctgttgttctcggaaaaattcgcctgccccgtctccggtttcacgctaccggagatcgaa
ccgcggctgttctcgttcaacaatccctatggcgcctgcccggagtgcggcggcctcggc
gttgagcagcacatcgatcccgacctcatcatcccggataaggacctgagcttgcggaag
ggtgcgatcgcgccgtgggcgaagtcgtcctcgccctattacatccagacgctgcaggcg
ctcggcaagttctacaagttcacgctcgataccaagtggaaggacctgccgaagaagacg
cagaccgcgctgctctacggttcgggcgaggatgcgattaaattctcctacgaggacggc
acgcgctcttacgataccaagaagccgttcgagggcatcgtcaccaacattgagcgtcgc
ttcgcggaaaccgaaagcgagtgggcacgcgaggaactcggtaaatattttgccgacgtg
ccttgcgcaggctgtcacggctatcggctgaagcccgaggcgctatgcgtgaaagtcggc
ggcaagcacatcggcgaaatctccgaactctcggtcaagaaagccggcgagtggttcgag
accgtgcctgacctgctgacgacccagcagaacgagatcgcggttcgtatcctgaaagag
atccgcgagcggctgtcgttcctgctcgatgtcggcctcaactatctgacactgtcgcgt
gcgtccggcacactatcaggcggcgagagccagcgtatccgccttgcttcgcagatcggc
tcgggcctcaccggcgttctctacgttctcgatgagccctcgatcggcctgcatcagcgc
gacaacgcgcgcctgctcgatacgctgaagcggctacgcgatctcggcaacaccgtgatc
gtggtcgaacatgacgaggacgccatccgtctcgccgatcatgtggtcgacgtcggcccc
ggcgccggcattcatggcggccacatcgtcgcgcgcggcacgcccgacgacgtcatgaaa
aatccgaagtcgctcaccggaaaatatctgaccggcgaaaaatttgtgccgattcccgag
cgccgtccgccgaaccatcgccggacgatgaaggtcatcaacgcgcgcggaaataacctc
aagaacatctcggcggaaattccactcggcctgttcacttgtgtcaccggtgtgtccggc
ggcggcaagtcgacgctcttgatcgatacgctctacaaggcaatcgcgcgcaagctcaac
ggcgcggccgacgcgcccgcaccgcatgatcgcatcgaggggctggagcatatcgacaag
atcatcgatatcgaccagtcgccgatcgggcgcacgccgcgctcgaaccccgcgacctac
accggcgcattcacaccgatccgcgagtggttcgcagggctgccggaagcgaaggcgcgc
ggctacgagccggggcgcttctccttcaacgtcaagggcgggcgctgcgaagcctgtcag
ggcgacggcgtcatcaagatcgagatgcacttcctgccggacgtctacgtcacctgcgat
acctgcaagggcaagcgctacaatcgtgaaacgctcgaggtgacgttcaagagcaagacc
attgccgacgtgctcgacatgacggtcgatgaggcggaagacttcttcaaggcggtgccg
cgcatccgcgagacattccgcaccctgcagcgcgtcggcctcggctacatccgcgtcggc
cagcaggcaacgacgctgtcgggcggcgaggcgcagcgcgtcaagctcgccaaggaactc
tcgaagcgcgcgaccggccgcacgctctacattctcgacgagccgaccacgggcctgcat
ttccacgacgtcgcaaagcttctcgaggtgctgcatgaactggtggcacagggcaacacc
gtggtggtgatcgagcacaatctcgaagtcatcaagacggccgactgggtgatcgacctc
ggccccgagggcggcgatggcggcggcgagatcgttgcctggggcccgccagaggatatc
gtccaggcgccgcgcagctacaccggcaaattccttgcgcccgtgctggcgaagggccaa
tccggccatctcgccaccagcgaggaagccgcggagtaa
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